Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RIM64_RS06160 Genome accession   NZ_CP133951
Coordinates   1274969..1275847 (-) Length   292 a.a.
NCBI ID   WP_014622727.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1269969..1280847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS06145 (RIM64_06145) pheT 1270422..1272827 (-) 2406 WP_165619234.1 phenylalanine--tRNA ligase subunit beta -
  RIM64_RS06150 (RIM64_06150) pheS 1273017..1274060 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  RIM64_RS06155 (RIM64_06155) - 1274797..1274955 (-) 159 WP_165619235.1 hypothetical protein -
  RIM64_RS06160 (RIM64_06160) endA 1274969..1275847 (-) 879 WP_014622727.1 DNA/RNA non-specific endonuclease Machinery gene
  RIM64_RS06165 (RIM64_06165) - 1275879..1276067 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  RIM64_RS06170 (RIM64_06170) murA 1276071..1277342 (-) 1272 WP_043040452.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RIM64_RS06175 (RIM64_06175) - 1277406..1277642 (-) 237 WP_043025653.1 DUF1146 family protein -
  RIM64_RS06180 (RIM64_06180) - 1277776..1278192 (-) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  RIM64_RS06185 (RIM64_06185) atpD 1278205..1279611 (-) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  RIM64_RS06190 (RIM64_06190) - 1279779..1280654 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31840.94 Da        Isoelectric Point: 10.2312

>NTDB_id=877715 RIM64_RS06160 WP_014622727.1 1274969..1275847(-) (endA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=877715 RIM64_RS06160 WP_014622727.1 1274969..1275847(-) (endA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524