Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RHS39_RS00720 Genome accession   NZ_CP133900
Coordinates   158596..159321 (-) Length   241 a.a.
NCBI ID   WP_031501650.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153596..164321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS00695 (RHS39_00695) - 154715..155206 (+) 492 WP_005458943.1 type II secretion system protein M -
  RHS39_RS00700 (RHS39_00700) - 155208..155969 (+) 762 WP_005496730.1 type II secretion system protein N -
  RHS39_RS00705 (RHS39_00705) cysQ 156256..157083 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RHS39_RS00710 (RHS39_00710) nudE 157124..157693 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  RHS39_RS00715 (RHS39_00715) nfuA 157914..158498 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  RHS39_RS00720 (RHS39_00720) comF 158596..159321 (-) 726 WP_031501650.1 amidophosphoribosyltransferase Machinery gene
  RHS39_RS00725 (RHS39_00725) bioH 159406..160173 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  RHS39_RS00730 (RHS39_00730) - 160297..160761 (+) 465 WP_005459035.1 hypothetical protein -
  RHS39_RS00735 (RHS39_00735) - 160897..163218 (-) 2322 WP_015296085.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27670.87 Da        Isoelectric Point: 9.3588

>NTDB_id=877412 RHS39_RS00720 WP_031501650.1 158596..159321(-) (comF) [Vibrio parahaemolyticus strain TW01]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCNHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHIRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSNILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSRELNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=877412 RHS39_RS00720 WP_031501650.1 158596..159321(-) (comF) [Vibrio parahaemolyticus strain TW01]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTAATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATAT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCAACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACTGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481