Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RHS38_RS15305 Genome accession   NZ_CP133891
Coordinates   3273048..3273773 (+) Length   241 a.a.
NCBI ID   WP_085609682.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3268048..3278773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS15290 (RHS38_15290) - 3269151..3271472 (+) 2322 WP_025441144.1 Tex family protein -
  RHS38_RS15295 (RHS38_15295) - 3271608..3272072 (-) 465 WP_005459035.1 hypothetical protein -
  RHS38_RS15300 (RHS38_15300) bioH 3272196..3272963 (-) 768 WP_029785296.1 pimeloyl-ACP methyl ester esterase BioH -
  RHS38_RS15305 (RHS38_15305) comF 3273048..3273773 (+) 726 WP_085609682.1 ComF family protein Machinery gene
  RHS38_RS15310 (RHS38_15310) nfuA 3273871..3274455 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  RHS38_RS15315 (RHS38_15315) nudE 3274676..3275245 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  RHS38_RS15320 (RHS38_15320) cysQ 3275286..3276113 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RHS38_RS15325 (RHS38_15325) - 3276400..3277161 (-) 762 WP_025545499.1 type II secretion system protein N -
  RHS38_RS15330 (RHS38_15330) - 3277163..3277654 (-) 492 WP_025545497.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27678.80 Da        Isoelectric Point: 8.8468

>NTDB_id=877402 RHS38_RS15305 WP_085609682.1 3273048..3273773(+) (comF) [Vibrio parahaemolyticus strain M0904]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQQ
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=877402 RHS38_RS15305 WP_085609682.1 3273048..3273773(+) (comF) [Vibrio parahaemolyticus strain M0904]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACAA
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477