Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RF668_RS04735 Genome accession   NZ_CP133787
Coordinates   923364..924302 (+) Length   312 a.a.
NCBI ID   WP_043736265.1    Uniprot ID   A0AAX4AKA7
Organism   Lactococcus cremoris strain KCKM 0438     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 918364..929302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS04700 (RF668_04700) - 918753..918950 (+) 198 WP_043736259.1 hypothetical protein -
  RF668_RS04705 (RF668_04705) - 918931..919527 (+) 597 WP_236683890.1 hypothetical protein -
  RF668_RS04710 (RF668_04710) - 919542..920000 (+) 459 WP_043736263.1 hypothetical protein -
  RF668_RS04715 (RF668_04715) - 920011..920415 (+) 405 WP_043736332.1 hypothetical protein -
  RF668_RS04720 (RF668_04720) - 920443..920915 (+) 473 Protein_880 hypothetical protein -
  RF668_RS04725 (RF668_04725) typA 921092..922924 (+) 1833 WP_031286284.1 translational GTPase TypA -
  RF668_RS04730 (RF668_04730) - 923025..923276 (+) 252 WP_011677086.1 DUF3165 family protein -
  RF668_RS04735 (RF668_04735) comYH 923364..924302 (+) 939 WP_043736265.1 class I SAM-dependent methyltransferase Machinery gene
  RF668_RS04740 (RF668_04740) - 924494..925681 (+) 1188 WP_011835968.1 acetate kinase -
  RF668_RS04745 (RF668_04745) - 925840..927027 (+) 1188 WP_043736267.1 acetate kinase -
  RF668_RS04750 (RF668_04750) - 927157..927609 (+) 453 WP_043736269.1 hypothetical protein -
  RF668_RS04755 (RF668_04755) pyrH 927694..928410 (+) 717 WP_004254608.1 UMP kinase -
  RF668_RS04760 (RF668_04760) frr 928567..929124 (+) 558 WP_011677081.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34556.57 Da        Isoelectric Point: 4.4888

>NTDB_id=876876 RF668_RS04735 WP_043736265.1 923364..924302(+) (comYH) [Lactococcus cremoris strain KCKM 0438]
MNMEKVAQGFELVVENITKLSGKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
HAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAAADGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISKHGSIMAVITLPSSLFNADAKAIYVLKKGSAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=876876 RF668_RS04735 WP_043736265.1 923364..924302(+) (comYH) [Lactococcus cremoris strain KCKM 0438]
ATGAACATGGAGAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGGGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGCTTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
CATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGTTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTGCTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCATTTGCAGTTTTCTTAGCACCAGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTAAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGTCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.521

100

0.497
  comYH Streptococcus mutans UA159

49.201

100

0.494