Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RF668_RS02395 Genome accession   NZ_CP133787
Coordinates   469630..470418 (-) Length   262 a.a.
NCBI ID   WP_011834262.1    Uniprot ID   A0A0M2ZTB8
Organism   Lactococcus cremoris strain KCKM 0438     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 464630..475418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS02380 (RF668_02380) gatB 466129..467562 (-) 1434 WP_309559175.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  RF668_RS02385 (RF668_02385) gatA 467587..469047 (-) 1461 WP_043737096.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  RF668_RS02390 (RF668_02390) gatC 469047..469352 (-) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RF668_RS02395 (RF668_02395) codY 469630..470418 (-) 789 WP_011834262.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RF668_RS02400 (RF668_02400) - 470571..471785 (-) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  RF668_RS02405 (RF668_02405) - 471914..473494 (-) 1581 WP_043737094.1 glycosyl transferase -
  RF668_RS02410 (RF668_02410) - 473692..473931 (-) 240 WP_011675217.1 hypothetical protein -
  RF668_RS02415 (RF668_02415) - 473943..474152 (-) 210 WP_014571884.1 hypothetical protein -
  RF668_RS02420 (RF668_02420) - 474321..475106 (-) 786 WP_043737090.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29158.48 Da        Isoelectric Point: 4.5254

>NTDB_id=876859 RF668_RS02395 WP_011834262.1 469630..470418(-) (codY) [Lactococcus cremoris strain KCKM 0438]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=876859 RF668_RS02395 WP_011834262.1 469630..470418(-) (codY) [Lactococcus cremoris strain KCKM 0438]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GTGAAGACGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGATACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTTGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZTB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462