Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WHK83_RS00275 Genome accession   NZ_CP150097
Coordinates   60783..62048 (+) Length   421 a.a.
NCBI ID   WP_023896029.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55783..67048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS00245 mutY 55952..56986 (-) 1035 WP_001113860.1 A/G-specific adenine glycosylase -
  WHK83_RS00250 - 57127..57489 (-) 363 WP_000130110.1 HIT family protein -
  WHK83_RS00255 - 57675..58412 (-) 738 WP_000100773.1 dienelactone hydrolase family protein -
  WHK83_RS00260 - 58584..58742 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  WHK83_RS00265 - 58937..59395 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  WHK83_RS00270 - 59505..60677 (+) 1173 WP_023896028.1 PQQ-dependent sugar dehydrogenase -
  WHK83_RS00275 rarA 60783..62048 (+) 1266 WP_023896029.1 replication-associated recombination protein A Machinery gene
  WHK83_RS00280 - 62063..62902 (-) 840 WP_000349488.1 formate/nitrite transporter family protein -
  WHK83_RS00285 - 63188..63391 (-) 204 WP_000418560.1 hypothetical protein -
  WHK83_RS00290 purC 63583..64302 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  WHK83_RS00295 - 64341..64943 (-) 603 WP_001177091.1 hypothetical protein -
  WHK83_RS00300 dapA 64959..65852 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  WHK83_RS00305 pncA 66182..66826 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46946.59 Da        Isoelectric Point: 5.8354

>NTDB_id=876811 WHK83_RS00275 WP_023896029.1 60783..62048(+) (rarA) [Acinetobacter baumannii strain HAU425]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGVNYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=876811 WHK83_RS00275 WP_023896029.1 60783..62048(+) (rarA) [Acinetobacter baumannii strain HAU425]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCAGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAGTTAATTATCTTT
ATCCTCATGACTACCCTGAGCACTTTGTATTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387