Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RE409_RS19885 Genome accession   NZ_CP133763
Coordinates   4089617..4091992 (-) Length   791 a.a.
NCBI ID   WP_201186004.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4084617..4096992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS19870 (RE409_19875) dtd 4086143..4086586 (-) 444 WP_201223517.1 D-aminoacyl-tRNA deacylase -
  RE409_RS19875 (RE409_19880) - 4086601..4088799 (-) 2199 WP_201186002.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RE409_RS19880 (RE409_19885) - 4089114..4089626 (-) 513 WP_053347125.1 adenine phosphoribosyltransferase -
  RE409_RS19885 (RE409_19890) recJ 4089617..4091992 (-) 2376 WP_201186004.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RE409_RS19890 (RE409_19895) secDF 4092140..4094401 (-) 2262 WP_201223515.1 protein translocase subunit SecDF -
  RE409_RS19895 (RE409_19900) - 4094602..4094949 (-) 348 WP_082527668.1 post-transcriptional regulator -
  RE409_RS19900 (RE409_19905) spoVB 4095075..4096637 (+) 1563 WP_201186008.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89118.63 Da        Isoelectric Point: 4.7621

>NTDB_id=876525 RE409_RS19885 WP_201186004.1 4089617..4091992(-) (recJ) [Peribacillus sp. R9-11]
MLKPKTRWNLRTADENKVAELAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRVFGDYDADGVTSTTVMMTTLTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLASEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFEDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLKGENRLI
AAKGIEQLRLTRRPGLVALMKVANIQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSENLAEATELANEIDDINKE
RQAMVAAMAEEAIQEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGHAKGSARSIAGFDLF
ESLSTCRELLPHFGGHPMAAGMTLKIEDVQELRDRMNMIAKEQLSEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDSENHKLDGVGFGLGHYVDEIAPHAEVSVIGELSINEWNNIKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLAEIPVHNRKIVIFSEDIYRRYPFLQNHPDLVLIKNEQEADQLDCMQGHVVLMDMPPL
RELLKRVIENKKPSRIYAHFSHEQDHFLSTVPTRDDFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTANAKKRDLSESESFIRKKEQFELEQELVYSSYQQLFDWFNHFLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=876525 RE409_RS19885 WP_201186004.1 4089617..4091992(-) (recJ) [Peribacillus sp. R9-11]
ATGTTAAAGCCAAAAACACGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGAACTAGCGGAAGAGCTTCATAT
CACACCCTTAGTTGCGGCCTTACTTGTGAATCGTGGCCTGGATACAATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTACTGAAAGATATGGATAAAGCAGTATATAGAATAAAAGAAGCCATTCAAAACGGA
GAGAAAATCAGGGTTTTTGGTGATTATGATGCGGACGGCGTGACATCGACTACGGTGATGATGACGACGCTTACTAGACT
AGGAGCCGATGTGGACTTTTATATTCCTAATCGGTTTACAGAGGGCTACGGGCCGAATCCAATGGCATTCCGCTTGGCTG
CTGAGCAAGGTGTAAAGGTATTAATAACCGTGGACACGGGAATTTCCGCAGTTGATGAAGCGAAACTTGCTAGCGAGCTT
GGCATGGATTATATTTTGACGGATCACCATGAACCGGGGCCGGAACTTCCCGAAGCACTAGCGATTATTCATCCAAAACT
TGAGGACAGTTCCTATCCATTTGAAGATCTTGCTGGCGTAGGGGTTGCTTTTAAACTGGCACATGCCTTGCTAGGTGAAC
TGCCAGAGGATTTGCTGGAGATTGCGGCAATCGGTACCATTGCGGATTTGGTACCTTTAAAAGGAGAAAACCGCCTCATT
GCAGCGAAAGGGATTGAGCAGTTACGCTTAACTAGACGTCCGGGGCTTGTTGCCCTAATGAAAGTGGCGAATATTCAGCA
GGAAGCATTGAATGAGGAATCAATCGGCTTTGCAATGGCACCACGAATCAATGCAGTTGGCCGCCTTGGTGATGCTGACC
CGGCTGTTGATTTATTGATGTCTGAAAACTTGGCTGAAGCGACGGAACTGGCTAATGAAATCGATGATATTAATAAAGAG
CGTCAGGCGATGGTTGCTGCAATGGCGGAAGAAGCGATTCAAGAGGTTGAGGAAAACTTCCCACCGGAGTCAAATGGTGT
GCTTATTATCGGGAGAGAAGGCTGGAACGCAGGGGTAGTGGGTATTGTAGCCTCCAAACTGGTTGAACGCTTTTACCGTC
CGACCATTGTGTTGAGCTATGACCGAGAAAAGGGGCACGCGAAAGGTTCAGCCCGGAGTATTGCTGGATTCGACCTTTTT
GAGAGTCTCTCTACTTGTCGCGAATTGCTGCCTCATTTTGGTGGACATCCGATGGCTGCGGGAATGACCTTGAAAATAGA
AGACGTACAGGAGCTTAGAGATCGCATGAACATGATTGCGAAAGAACAGCTCAGCGAAGAAGATTTCACACCTATTACCA
ACTTGGATGGAGCCACAACATTAGCGGAAGTTTCCATTCAAACGATTCAGGAAATGAGCCTGCTAGCGCCATTTGGAGTT
ACCAATCCAAAGCCTAAAATCTTGATAGATTCCGTCCAGCTTTCAAGTGTCCGTAAAATTGGCGCCAATCAGAATCACTT
GAAGGTGCAGCTTGAAGATAGTGAGAATCATAAACTCGACGGCGTTGGGTTTGGTCTAGGTCATTATGTGGATGAAATAG
CTCCGCATGCAGAAGTCTCCGTGATCGGCGAGCTTTCCATTAATGAGTGGAATAATATCAAAAAGCCGCAAATCTTTGTT
CAGGATGTATCGGTCAATCATTGGCAGCTCTTTGATTATCGCGGCAAGGGACAGGCAGAGAAGTGGCTAGCTGAGATACC
GGTTCATAATCGGAAAATTGTTATTTTCTCGGAAGATATTTATAGAAGATATCCTTTTTTACAAAACCATCCCGATCTTG
TTTTAATCAAGAATGAACAGGAAGCAGATCAGCTCGACTGCATGCAAGGACATGTGGTTCTTATGGACATGCCCCCGTTA
AGAGAGTTGTTAAAACGGGTGATTGAAAATAAGAAGCCGTCGCGGATATACGCACATTTTTCTCATGAACAGGATCATTT
CTTAAGTACGGTGCCAACACGGGACGACTTTAAATGGTTCTATGCCTTTCTTGCTAAAAAGGGTCCGCTTGATGTGAAAA
GGTATGGTGATGATCTTGCCAAATACCGAGGCTGGTCAAGAGATACAGTGGATTTTATTTCAAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAGCCAATGCGAAAAAACGCGATCTCAGTGAGTCTGAATCGTT
TATAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTCTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTTTTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(304-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.719

99.115

0.542