Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RE409_RS19480 Genome accession   NZ_CP133763
Coordinates   4002603..4005011 (-) Length   802 a.a.
NCBI ID   WP_057219079.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3997603..4010011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS19455 (RE409_19460) - 3999057..4000184 (-) 1128 WP_207198811.1 AI-2E family transporter -
  RE409_RS19460 (RE409_19465) - 4000350..4000565 (-) 216 WP_053348138.1 hypothetical protein -
  RE409_RS19465 (RE409_19470) - 4000555..4001097 (-) 543 WP_242489061.1 PRC-barrel domain-containing protein -
  RE409_RS19470 (RE409_19475) - 4001156..4001917 (-) 762 WP_309557904.1 TPM domain-containing protein -
  RE409_RS19475 (RE409_19480) - 4001917..4002483 (-) 567 WP_201185915.1 LemA family protein -
  RE409_RS19480 (RE409_19485) recD2 4002603..4005011 (-) 2409 WP_057219079.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RE409_RS19485 (RE409_19490) - 4005048..4005713 (-) 666 WP_201223599.1 lipopolysaccharide assembly protein LapB -
  RE409_RS19490 (RE409_19495) mnmA 4005837..4006952 (-) 1116 WP_053347059.1 tRNA 2-thiouridine(34) synthase MnmA -
  RE409_RS19495 (RE409_19500) - 4006982..4008127 (-) 1146 WP_309557905.1 cysteine desulfurase family protein -
  RE409_RS19500 (RE409_19505) cymR 4008188..4008607 (-) 420 WP_053347061.1 cysteine metabolism transcriptional regulator CymR -
  RE409_RS19505 (RE409_19510) - 4008697..4008957 (+) 261 WP_309557906.1 hypothetical protein -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90742.57 Da        Isoelectric Point: 4.8187

>NTDB_id=876523 RE409_RS19480 WP_057219079.1 4002603..4005011(-) (recD2) [Peribacillus sp. R9-11]
MSQQDSMDLFAEEKMFMKGSHLVTIFHNEENMYSVVRIRVNETNLNYDEKEAVVTGYFPRMHEDETYIFYGAMKEHQRFG
LQFHVEHFRKDLPQSKEGIVSYLSGELFKGIGKKTAESIVETLGEKAISKILAQPSILDDIPKLSGEKAKSLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKHDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGNHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTEAGKIVVEDQRIYLPSLYYSEKGIVMNIKRMLAQTE
YEDQFPESEFLLALGKLEERLNVSYASAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLEGRIVIIDEVSMVDTWLAHQLFKALPENCQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHDIKKGRLPNDVTKQQEDRSFIRCKTDQIAQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNVNEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKIIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLLEKLRETLNDEEMPAESAELPMQEESYFDILMHEDPMIGMGNVTPYD
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=876523 RE409_RS19480 WP_057219079.1 4002603..4005011(-) (recD2) [Peribacillus sp. R9-11]
TTGAGCCAGCAAGATTCGATGGATTTGTTTGCAGAAGAGAAAATGTTTATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATCCGTGTGAATGAAACGAATTTGAACTATGACGAGAAGGAAGCGGTCG
TCACGGGTTATTTTCCGAGGATGCATGAGGATGAGACGTATATTTTTTATGGAGCAATGAAAGAGCACCAACGTTTTGGT
CTTCAATTTCATGTCGAGCATTTTCGAAAGGATTTGCCCCAATCCAAGGAAGGAATCGTCAGTTATTTATCTGGTGAACT
GTTCAAAGGTATTGGGAAAAAAACAGCCGAAAGCATTGTCGAAACACTCGGGGAGAAGGCAATTTCTAAAATTCTGGCTC
AGCCTTCCATACTTGATGATATTCCGAAGCTATCCGGGGAAAAGGCGAAGAGTCTCTATGATACTTTAGTCGAACATCAA
GGTCTGGAACAGGTAATGATTGCTCTTAATCAATATGGCTTTGGTCCACAGCTGTCTATGAAGATTTATCAAATGTATAA
GCATGATACAATCACCATGGTTCAGGGAAATCCATATAAGCTTGTGGAGGATATCGAAGGAATTGGTTTTGGGCGAGCGG
ATGAGCTTGGGCATCAGCTCGGCATTTCCGGTAACCATCCTGATCGTATCAAGGCTGCGTGCTTATATACACTAGAATCA
CAATGTCTGCAGGATGGAAATATCTACATAGAAGCTGAGCAGCTGTTGGAAGCTGTCAAGCGGCTGCTTGAGGAGAATAA
GCGCGATCGAATTGAGTTCACAAACATTTCCTCGGAAATAATCGAATTAACGGAGGCGGGGAAAATCGTTGTCGAAGATC
AACGAATTTACCTGCCATCCCTTTACTATTCTGAAAAGGGAATTGTTATGAACATCAAGCGGATGCTAGCACAAACCGAG
TATGAAGACCAGTTCCCAGAATCGGAATTTTTACTGGCACTTGGTAAGCTGGAAGAGCGTCTAAATGTTTCCTATGCCTC
AGCTCAAAAAGAGGCGATACAAACAGCCCTGCAGTCGCCTATGTTGATTTTGACGGGTGGACCTGGTACGGGGAAGACAA
CGGTTATCAAAGGGATTGTCGAGTTATATGCCGAACTTCATGGTGTATCTATGGACATTAACGATTATAAAAAAGAGGGC
AGCGATCCGTTCCCGTTTGTGCTTGCGGCACCTACTGGACGTGCAGCGAAACGCATGGCTGAATCGACGGGTCTTCCCGC
TGTTACGATTCACCGCTTGCTCGGATGGAACGGAAGTGAAGGCTTTTCCCATGATGAAGATAATCAGTTAGAAGGCCGCA
TTGTCATTATTGATGAGGTTTCTATGGTGGATACGTGGTTAGCTCATCAATTGTTTAAAGCCTTGCCGGAAAATTGCCAA
GTGATTTTAGTTGGTGATGAAGATCAGCTGCCTTCAGTCGGACCGGGACAGGTGCTAAAGGATTTGCTTGCTTCGAATTG
TGTGCCGACTGTCAGTCTTGAGCATATTTATCGTCAAGCGGATGGTTCATCAATCATTGAATTGGCCCATGATATAAAAA
AAGGCCGGCTTCCAAATGATGTTACGAAGCAGCAGGAAGATCGATCGTTCATTCGCTGTAAGACTGACCAAATCGCTCAG
GTTATTGAGAAAGTTGTTGCGAATGCCAGGACGAAGGGTTTCACTGCCAAAGATATTCAAGTGCTGGCCCCGATGTATAG
AGGACCTGCCGGGATTGATGCGTTGAATAAAATGCTGCAAGAAGTGTTTAATAGCAATGTGAATGAAAAGCGGCGGGAAA
TCAAGTTTGGAGACGTGATCTACCGAACGGGAGACAAAGTGCTTCAACTGGTGAACCAGCCGGAAGAAGGCGTCTTTAAC
GGTGATATGGGTGAAATCGTGTCAATTTTGTTTGCGAAGGAAAATACTGATCATGTCGATAAGATCATTATATCGTTTGA
AGGCATTGAAGTAACTTACACGAAGCAGGATTTGAACCAGATTACCCACGCGTATTGCTGTTCAATCCATAAATCGCAGG
GAAGCGAGTTTCCCATTGTGATTTTGCCTGTTGTAAAAAGTTATTATCGGATGCTCCGACGTAATCTATTGTATACAGCG
ATTACCCGAAGCAAGAATTTCTTGATACTTTGTGGTGAAGAAGATGCTTTCCGTTTAGGTATCGAGCGCAATGATGAAAT
GCGCCGGAAAACTACATTACTTGAAAAACTTCGTGAAACTTTGAATGATGAAGAAATGCCAGCTGAATCTGCAGAGTTGC
CAATGCAAGAGGAAAGTTATTTTGACATACTGATGCATGAAGATCCGATGATTGGGATGGGTAATGTCACACCTTATGAT
TTTATGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.469

100

0.625