Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WKU69_RS19055 Genome accession   NZ_CP149838
Coordinates   3927009..3928274 (-) Length   421 a.a.
NCBI ID   WP_339242758.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3922009..3933274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU69_RS19025 (WKU69_19025) pncA 3922230..3922874 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  WKU69_RS19030 (WKU69_19030) dapA 3923204..3924097 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  WKU69_RS19035 (WKU69_19035) - 3924113..3924715 (+) 603 WP_001177091.1 hypothetical protein -
  WKU69_RS19040 (WKU69_19040) purC 3924753..3925472 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  WKU69_RS19045 (WKU69_19045) - 3925665..3925868 (+) 204 WP_000418559.1 hypothetical protein -
  WKU69_RS19050 (WKU69_19050) - 3926154..3926993 (+) 840 WP_000349500.1 formate/nitrite transporter family protein -
  WKU69_RS19055 (WKU69_19055) rarA 3927009..3928274 (-) 1266 WP_339242758.1 replication-associated recombination protein A Machinery gene
  WKU69_RS19060 (WKU69_19060) - 3928380..3929552 (-) 1173 WP_000986279.1 PQQ-dependent sugar dehydrogenase -
  WKU69_RS19065 (WKU69_19065) - 3929662..3930120 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  WKU69_RS19070 (WKU69_19070) - 3930315..3930473 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  WKU69_RS19075 (WKU69_19075) - 3930645..3931382 (+) 738 WP_000100776.1 dienelactone hydrolase family protein -
  WKU69_RS19080 (WKU69_19080) - 3931568..3931930 (+) 363 WP_000130110.1 HIT family protein -
  WKU69_RS19085 (WKU69_19085) mutY 3932071..3933105 (+) 1035 WP_001113868.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46966.62 Da        Isoelectric Point: 5.8354

>NTDB_id=876099 WKU69_RS19055 WP_339242758.1 3927009..3928274(-) (rarA) [Acinetobacter baumannii strain 2024CK-00130]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIFFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=876099 WKU69_RS19055 WP_339242758.1 3927009..3928274(-) (rarA) [Acinetobacter baumannii strain 2024CK-00130]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTTTTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCTGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(46-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385