Detailed information NTG0876064

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RGU79_RS10405
• Genome accession: NZ_CP133717
• Coordinates: 2165938..2166639 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain Ab1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2160938..2171639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGU79_RS10375 (RGU79_10395)	-	2161244..2161687 (-)	444	WP_001246675.1	SRPBCC family protein	-
RGU79_RS10380 (RGU79_10400)	tadA	2161757..2162260 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RGU79_RS10385 (RGU79_10405)	-	2162267..2163391 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RGU79_RS10390 (RGU79_10410)	ung	2163388..2164101 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
RGU79_RS10395 (RGU79_10415)	-	2164152..2164748 (-)	597	WP_000908455.1	6-carboxytetrahydropterin synthase	-
RGU79_RS10400 (RGU79_10420)	gspK	2164979..2165938 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
RGU79_RS10405 (RGU79_10425)	xcpW	2165938..2166639 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RGU79_RS10410 (RGU79_10430)	xcpV	2166639..2167019 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RGU79_RS10415 (RGU79_10435)	-	2167009..2167563 (-)	555	WP_000841367.1	type II secretion system protein	-
RGU79_RS10420 (RGU79_10440)	-	2167573..2168181 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RGU79_RS10425 (RGU79_10445)	-	2168219..2168992 (-)	774	WP_000497304.1	TatD family hydrolase	-
RGU79_RS10430 (RGU79_10450)	-	2169010..2169351 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
RGU79_RS10435 (RGU79_10455)	-	2169363..2170343 (-)	981	WP_001075408.1	DNA polymerase III subunit delta'	-
RGU79_RS10440 (RGU79_10460)	kdsB	2170355..2171116 (-)	762	WP_000680702.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=876064 RGU79_RS10405 WP_000594572.1 2165938..2166639(-) (xcpW) [Acinetobacter baumannii strain Ab1]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=876064 RGU79_RS10405 WP_000594572.1 2165938..2166639(-) (xcpW) [Acinetobacter baumannii strain Ab1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991