Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RGU80_RS01605 Genome accession   NZ_CP133706
Coordinates   344983..345408 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain CRAb2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339983..350408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU80_RS01595 (RGU80_01600) pilY1 340637..344491 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  RGU80_RS01600 (RGU80_01605) pilY2 344504..344986 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RGU80_RS01605 (RGU80_01610) pilE 344983..345408 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RGU80_RS01610 (RGU80_01615) rpsP 345555..345806 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RGU80_RS01615 (RGU80_01620) rimM 345826..346374 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RGU80_RS01620 (RGU80_01625) trmD 346420..347160 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RGU80_RS01625 (RGU80_01630) rplS 347368..347736 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RGU80_RS01630 (RGU80_01635) - 347788..348729 (-) 942 WP_085946156.1 triacylglycerol lipase -
  RGU80_RS01635 (RGU80_01640) - 348844..349878 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=875960 RGU80_RS01605 WP_000788342.1 344983..345408(+) (pilE) [Acinetobacter baumannii strain CRAb2]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=875960 RGU80_RS01605 WP_000788342.1 344983..345408(+) (pilE) [Acinetobacter baumannii strain CRAb2]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518