Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RFN66_RS15910 Genome accession   NZ_CP133705
Coordinates   3080908..3083256 (-) Length   782 a.a.
NCBI ID   WP_025811058.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3075908..3088256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS15890 (RFN66_15890) - 3075951..3077522 (+) 1572 WP_309539434.1 SH3 domain-containing protein -
  RFN66_RS15895 (RFN66_15895) dtd 3077550..3077993 (-) 444 WP_020452409.1 D-aminoacyl-tRNA deacylase -
  RFN66_RS15900 (RFN66_15900) - 3078007..3080208 (-) 2202 WP_023855390.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RFN66_RS15905 (RFN66_15905) - 3080378..3080890 (-) 513 WP_023855391.1 adenine phosphoribosyltransferase -
  RFN66_RS15910 (RFN66_15910) recJ 3080908..3083256 (-) 2349 WP_025811058.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RFN66_RS15915 (RFN66_15915) - 3083328..3083621 (-) 294 WP_023855393.1 lipopolysaccharide assembly LapA domain-containing protein -
  RFN66_RS15920 (RFN66_15920) secDF 3083773..3085998 (-) 2226 WP_039072894.1 protein translocase subunit SecDF -
  RFN66_RS15925 (RFN66_15925) - 3086035..3086331 (-) 297 WP_023855396.1 post-transcriptional regulator -
  RFN66_RS15930 (RFN66_15930) spoVB 3086449..3088002 (+) 1554 WP_026579144.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87609.33 Da        Isoelectric Point: 4.9120

>NTDB_id=875923 RFN66_RS15910 WP_025811058.1 3080908..3083256(-) (recJ) [Bacillus paralicheniformis strain CP47]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRRTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTKDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGENKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLVLESRYAVFIDIPPSLDI
FDQVIKGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=875923 RFN66_RS15910 WP_025811058.1 3080908..3083256(-) (recJ) [Bacillus paralicheniformis strain CP47]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGATTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTAAATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAACGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATTTGATCATTACGGATCACCATGAGCCGGGACCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTTCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAGAACGAAGCGCCCCGGATTAAAGGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATTGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAAAAGACGAAACAGAAGCGGAAGAGCTGGCCGAAGATATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGATCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGCGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTATTACAGGCCCGCCA
TCGTTCTCGGTATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAT
CTCTCGGAGTGCCGGGATATTCTCCCGCACTTCGGCGGGCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGATGT
TTCGGCACTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTTCGGCACGGGAAAT
CCGAAGCCCTTCGTCCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTGCTGGCAGACGGCGAGAACAAGCTTGATTGCATCGGATTTTATAAAGGCGCCATCGAAGACGGGATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCA
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGATCCTGCGAA
ACGGGCGTGCATCTGCTTCCGTGAGGAAACCAAAGCGAAGCTTGCGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGTCCTGAAGATGCAGAGCGTCTCGTCCTTGAGAGCCGCTATGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAAGTGATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAAC
ATTTCCAACTAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-436)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.014

99.872

0.689