Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RFN66_RS09935 Genome accession   NZ_CP133705
Coordinates   1891031..1891810 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886031..1896810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS09915 (RFN66_09915) trmFO 1886728..1888032 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RFN66_RS09920 (RFN66_09920) xerC 1888099..1889013 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  RFN66_RS09925 (RFN66_09925) hslV 1889027..1889572 (+) 546 WP_271725188.1 ATP-dependent protease subunit HslV -
  RFN66_RS09930 (RFN66_09930) hslU 1889589..1890992 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  RFN66_RS09935 (RFN66_09935) codY 1891031..1891810 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RFN66_RS09940 (RFN66_09940) flgB 1892163..1892552 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  RFN66_RS09945 (RFN66_09945) flgC 1892552..1893004 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  RFN66_RS09950 (RFN66_09950) fliE 1893018..1893335 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  RFN66_RS09955 (RFN66_09955) fliF 1893386..1894987 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  RFN66_RS09960 (RFN66_09960) fliG 1895001..1896017 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  RFN66_RS09965 (RFN66_09965) fliH 1896001..1896768 (+) 768 WP_309539932.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=875906 RFN66_RS09935 WP_003181756.1 1891031..1891810(+) (codY) [Bacillus paralicheniformis strain CP47]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=875906 RFN66_RS09935 WP_003181756.1 1891031..1891810(+) (codY) [Bacillus paralicheniformis strain CP47]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGTCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATTGGAGGAGGCGAAAGACTCGGCACCTTGATTCTCTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467