Detailed information NTG0087583

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: TOL5_RS01895
• Genome accession: NZ_AP024708
• Coordinates: 408175..408609 (+)
• Length: 144 a.a.
• NCBI ID: WP_042088546.1
• Uniprot ID: -
• Organism: Acinetobacter sp. Tol 5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 403175..413609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TOL5_RS01885 (TOL5_03600)	-	403920..407582 (+)	3663	WP_221260645.1	PilC/PilY family type IV pilus protein	-
TOL5_RS01890 (TOL5_03610)	-	407591..408181 (+)	591	WP_042088547.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
TOL5_RS01895 (TOL5_03620)	comF	408175..408609 (+)	435	WP_042088546.1	type IV pilin protein	Machinery gene
TOL5_RS01900 (TOL5_03630)	-	409404..409910 (+)	507	WP_042088545.1	pilus assembly FimT family protein	-
TOL5_RS01905 (TOL5_03640)	pilV	409907..410464 (+)	558	WP_221260646.1	type IV pilus modification protein PilV	-
TOL5_RS01910 (TOL5_03650)	-	410464..411435 (+)	972	WP_100886072.1	PilW family protein	-
TOL5_RS01915 (TOL5_03660)	-	411436..412206 (+)	771	WP_009586178.1	pilus assembly PilX family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16258.51 Da
• Isoelectric Point: 8.9174

>NTDB_id=87583 TOL5_RS01895 WP_042088546.1 408175..408609(+) (comF) [Acinetobacter sp. Tol 5]
MVKNISKNRGFTLMELMIVVAIIAILAAIAYPSYSNYKIRTNRVDTQSEMMQISQRLQSYYAIHHNYTNAKLDTNTMTKD
YPAFAELYTIRLTTSDQTWTLTAEPKSNSVQSSDGNLVLNSQGQKCWMKGATCIPSATTNWEGQ

Nucleotide

• Length: 435 bp

>NTDB_id=87583 TOL5_RS01895 WP_042088546.1 408175..408609(+) (comF) [Acinetobacter sp. Tol 5]
ATGGTGAAAAATATCAGTAAAAATAGGGGTTTTACTTTGATGGAGTTGATGATTGTTGTTGCAATCATCGCCATTCTTGC
GGCAATTGCTTATCCGTCATACTCGAATTATAAAATTCGTACAAATCGAGTGGATACACAAAGTGAAATGATGCAAATTT
CTCAGCGTTTACAAAGTTATTATGCCATTCATCATAATTATACCAATGCAAAGCTGGATACCAATACCATGACTAAAGAT
TATCCCGCCTTTGCTGAGCTTTATACAATTAGATTAACAACCAGTGATCAAACATGGACATTGACAGCAGAACCAAAATC
AAATTCTGTTCAGTCATCAGACGGGAATCTTGTACTAAATAGCCAGGGTCAAAAATGTTGGATGAAAGGCGCTACATGTA
TTCCTTCCGCTACCACAAACTGGGAAGGTCAATAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (32-112)

• Prokaryotic N-terminal methylation motif (N_methyl) (6-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	50.714	97.222	0.493
pilE	Acinetobacter baumannii D1279779	50	94.444	0.472