Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RGC87_RS03270 Genome accession   NZ_CP133660
Coordinates   655888..656283 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JH4322     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 650888..661283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC87_RS03240 (RGC87_03240) - 652149..652553 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RGC87_RS03245 (RGC87_03245) - 652889..652981 (+) 93 WP_031824610.1 hypothetical protein -
  RGC87_RS03250 (RGC87_03250) - 653113..653346 (+) 234 WP_000384523.1 DUF1146 family protein -
  RGC87_RS03255 (RGC87_03255) murA 653457..654722 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RGC87_RS03260 (RGC87_03260) fabZ 654756..655196 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RGC87_RS03265 (RGC87_03265) - 655254..655694 (-) 441 WP_000846746.1 YwpF-like family protein -
  RGC87_RS03270 (RGC87_03270) ssb 655888..656283 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RGC87_RS03275 (RGC87_03275) sceD 656672..657367 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  RGC87_RS03280 (RGC87_03280) tenA 657754..658443 (+) 690 WP_000396064.1 thiaminase II -
  RGC87_RS03285 (RGC87_03285) thiD 658436..659266 (+) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RGC87_RS03290 (RGC87_03290) thiM 659250..660041 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  RGC87_RS03295 (RGC87_03295) thiE 660043..660684 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=875665 RGC87_RS03270 WP_000932694.1 655888..656283(+) (ssb) [Staphylococcus aureus strain JH4322]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=875665 RGC87_RS03270 WP_000932694.1 655888..656283(+) (ssb) [Staphylococcus aureus strain JH4322]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992