Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABK23_RS02055 Genome accession   NZ_AP027576
Coordinates   457454..457921 (-) Length   155 a.a.
NCBI ID   WP_022646190.1    Uniprot ID   -
Organism   Escherichia coli strain LR-62-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452454..462921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK23_RS02030 (VEE29_03960) rpsG 452595..453065 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  AABK23_RS02035 (VEE29_03970) fusA 453162..455276 (+) 2115 WP_000124700.1 elongation factor G -
  AABK23_RS02040 (VEE29_03980) tuf 455347..456531 (+) 1185 WP_000031783.1 elongation factor Tu -
  AABK23_RS02045 (VEE29_03990) bfd 456714..456908 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AABK23_RS02050 (VEE29_04000) bfr 456981..457457 (+) 477 WP_000675515.1 bacterioferritin -
  AABK23_RS02055 (VEE29_04010) pilD 457454..457921 (-) 468 WP_022646190.1 A24 family peptidase Machinery gene
  AABK23_RS02060 (VEE29_04020) rpsJ 458300..458611 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  AABK23_RS02065 (VEE29_04030) rplC 458644..459273 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  AABK23_RS02070 (VEE29_04040) rplD 459284..459889 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  AABK23_RS02075 (VEE29_04050) rplW 459886..460188 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  AABK23_RS02080 (VEE29_04060) rplB 460206..461027 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  AABK23_RS02085 (VEE29_04070) rpsS 461044..461322 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  AABK23_RS02090 (VEE29_04080) rplV 461337..461669 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  AABK23_RS02095 (VEE29_04090) rpsC 461687..462388 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  AABK23_RS02100 (VEE29_04100) rplP 462401..462811 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=87561 AABK23_RS02055 WP_022646190.1 457454..457921(-) (pilD) [Escherichia coli strain LR-62-2]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLATAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=87561 AABK23_RS02055 WP_022646190.1 457454..457921(-) (pilD) [Escherichia coli strain LR-62-2]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATTCTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGACTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368