Detailed information NTG0875587

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: RFN60_RS13720
• Genome accession: NZ_CP133653
• Coordinates: 2642937..2645333 (-)
• Length: 798 a.a.
• NCBI ID: WP_015251573.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain CP38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2637937..2650333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN60_RS13685 (RFN60_13685)	glnQ	2639009..2639737 (+)	729	WP_003246180.1	amino acid ABC transporter ATP-binding protein	-
RFN60_RS13690 (RFN60_13690)	glnH	2639759..2640580 (+)	822	WP_015251575.1	glutamine ABC transporter substrate-binding protein GlnH	-
RFN60_RS13695 (RFN60_13695)	glnM	2640641..2641291 (+)	651	WP_029727139.1	amino acid ABC transporter permease	-
RFN60_RS13700 (RFN60_13700)	glnP	2641308..2641964 (+)	657	WP_003229784.1	amino acid ABC transporter permease	-
RFN60_RS13705 (RFN60_13705)	yrzQ	2641999..2642130 (-)	132	WP_003229780.1	YrzQ family protein	-
RFN60_RS13710 (RFN60_13710)	-	2642152..2642343 (-)	192	WP_003225893.1	hypothetical protein	-
RFN60_RS13715 (RFN60_13715)	yrrD	2642355..2642879 (-)	525	WP_010886583.1	PRC-barrel domain-containing protein	-
RFN60_RS13720 (RFN60_13720)	recD2	2642937..2645333 (-)	2397	WP_015251573.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RFN60_RS13725 (RFN60_13725)	yrrB	2645358..2645978 (-)	621	WP_015251572.1	tetratricopeptide repeat protein	-
RFN60_RS13730 (RFN60_13730)	mnmA	2646064..2647179 (-)	1116	WP_014480424.1	tRNA 2-thiouridine(34) synthase MnmA	-
RFN60_RS13735 (RFN60_13735)	iscSA	2647207..2648349 (-)	1143	WP_003229769.1	cysteine desulfurase family protein	-
RFN60_RS13740 (RFN60_13740)	cymR	2648368..2648784 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
RFN60_RS13745 (RFN60_13745)	rarA	2648987..2650252 (+)	1266	WP_004398500.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 89125.70 Da
• Isoelectric Point: 5.0708

>NTDB_id=875587 RFN60_RS13720 WP_015251573.1 2642937..2645333(-) (recD2) [Bacillus subtilis strain CP38]
MQQHPDQLKLEEEPYLKGTVNTVIYHNGTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ

Nucleotide

• Length: 2397 bp

>NTDB_id=875587 RFN60_RS13720 WP_015251573.1 2642937..2645333(-) (recD2) [Bacillus subtilis strain CP38]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGGCACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTATT
CGAGGGGATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCCAGACTCTCAAAAAAGAAAGCAGACACGCTGGCTGGCGCATTGCAGCGGCATCAGGGA
CTGGAGCAAATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAATCCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AGCTGGGCAGCAGAATGGGTCTTTCGGGTAATCATCCTGAGCGGGTAAAAGCTGCTATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAACAGCTGATCATTGACACCCAATCTCTGTTAAATCAGTCAGCAAG
GGAAGGACAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCTAGCCAAACC
GAATATGAGAACCAGTTTCCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGAACGGATGGACGTTCAGTATGC
CCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAAA
CGACGGTAATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGGGACTCCCTGCAGT
TACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGATCCCTGATCATATACAAATC
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGTCCGGGACAAGTGCTCAGAGACCTGCTGGCATCCCAGGTGAT
TCCGACTGTGAGACTGACAGACATCTATCGCCAGGCAGAAGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATCAAAGAAGTA
GTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACAGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATTAATGAATTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTGAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-662)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (346-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	99.875	100	0.999