Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RFN60_RS08650 Genome accession   NZ_CP133653
Coordinates   1662638..1663417 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain CP38     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657638..1668417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS08630 (RFN60_08630) trmFO 1658331..1659638 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RFN60_RS08635 (RFN60_08635) xerC 1659706..1660620 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  RFN60_RS08640 (RFN60_08640) clpQ 1660633..1661178 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  RFN60_RS08645 (RFN60_08645) hslU 1661195..1662598 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  RFN60_RS08650 (RFN60_08650) codY 1662638..1663417 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RFN60_RS08655 (RFN60_08655) flgB 1663797..1664186 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  RFN60_RS08660 (RFN60_08660) flgC 1664186..1664638 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  RFN60_RS08665 (RFN60_08665) fliE 1664649..1664969 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  RFN60_RS08670 (RFN60_08670) fliF 1665015..1666625 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  RFN60_RS08675 (RFN60_08675) fliG 1666638..1667654 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RFN60_RS08680 (RFN60_08680) fliH 1667647..1668399 (+) 753 WP_044052687.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=875567 RFN60_RS08650 WP_003220850.1 1662638..1663417(+) (codY) [Bacillus subtilis strain CP38]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=875567 RFN60_RS08650 WP_003220850.1 1662638..1663417(+) (codY) [Bacillus subtilis strain CP38]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467