Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V8N34_RS10055 Genome accession   NZ_CP149804
Coordinates   2081942..2083225 (+) Length   427 a.a.
NCBI ID   WP_248025823.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076942..2088225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS10025 (V8N34_10025) - 2078323..2078445 (-) 123 WP_024381232.1 membrane protein -
  V8N34_RS10030 (V8N34_10030) - 2078450..2079196 (-) 747 WP_024381233.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  V8N34_RS10035 (V8N34_10035) prmA 2079198..2080151 (-) 954 WP_044675524.1 50S ribosomal protein L11 methyltransferase -
  V8N34_RS10040 (V8N34_10040) - 2080710..2081063 (-) 354 WP_014636733.1 ASCH domain-containing protein -
  V8N34_RS10045 (V8N34_10045) - 2081065..2081535 (-) 471 WP_318825512.1 DUF3013 family protein -
  V8N34_RS10050 (V8N34_10050) - 2081537..2081872 (-) 336 WP_023371812.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  V8N34_RS10055 (V8N34_10055) rarA 2081942..2083225 (+) 1284 WP_248025823.1 replication-associated recombination protein A Machinery gene
  V8N34_RS10070 (V8N34_10070) nrdG 2083706..2084263 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  V8N34_RS10075 (V8N34_10075) - 2084450..2084944 (-) 495 WP_184493645.1 GNAT family N-acetyltransferase -
  V8N34_RS10080 (V8N34_10080) - 2084946..2086292 (-) 1347 Protein_1946 5'-nucleotidase C-terminal domain-containing protein -
  V8N34_RS10085 (V8N34_10085) - 2086294..2086428 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47214.83 Da        Isoelectric Point: 6.5833

>NTDB_id=875522 V8N34_RS10055 WP_248025823.1 2081942..2083225(+) (rarA) [Streptococcus suis strain YA]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESEGGRHIDLDAVENSLQKSYISMDKNGDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVI
DLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTAN
DTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=875522 V8N34_RS10055 WP_248025823.1 2081942..2083225(+) (rarA) [Streptococcus suis strain YA]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAGCACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATCGCCTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGTGGTCTGGTTCTCATGCTCGATGAGATTCATCGCCTCAACAAAACTAA
ACAGGACTTCCTGCTTCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACAACAGAAAATCCATTTTTCTCTA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCCTTGAAAACCAGCCACATCCGACAGGCTCTGGAA
CTGGCTTTGACAGACAGCGAACGCGGTTTTGACTTCCCCGTCACCATTGAACCTGAGGCTCTGGATTTCCTAGCAAATGC
GACAAACGGCGACCTCCGTGCCGCCTATAATTCACTAGAACTGGCTGTACTGTCTACCAAAGAAAGCGAGGGCGGACGCC
ATATCGACTTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTACGAC
ATCCTCTCCGCCCTACAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCAGCTCGTTTGATTGAGGC
CGAAGACCTACCTAGCCTGGCTCGTCGCTTAACCGTTATTGCCTACGAAGACATCGGCTTAGCCAATCCAGAGGCACAGA
TTCATACGGTGACCGCCCTTGAAGCGGCGCAGAAAATCGGCTTTCCAGAGGCACGGATTTTGATTGCCAATGTGGTGATT
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGGTCA
TCTACCTATTCCAAATCACCTGCGAGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGTATC
CGCATGCCTATCCTGAGAAATGGGTGGACCAACAATACCTGCCCGATAAGTTACTAAATGCGGACTACTTCACTGCCAAC
GACACTGGAAAATATGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAATCC
TTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.809

97.892

0.585