Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V8N34_RS05245 Genome accession   NZ_CP149804
Coordinates   1086652..1088388 (-) Length   578 a.a.
NCBI ID   WP_313921445.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081652..1093388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS05225 (V8N34_05225) thrB 1081653..1082513 (-) 861 WP_172060256.1 homoserine kinase -
  V8N34_RS05230 (V8N34_05230) - 1082517..1083803 (-) 1287 WP_172060258.1 homoserine dehydrogenase -
  V8N34_RS05235 (V8N34_05235) - 1083908..1084831 (+) 924 WP_172078928.1 polysaccharide deacetylase family protein -
  V8N34_RS05240 (V8N34_05240) rcrQ 1084874..1086643 (-) 1770 WP_172078929.1 ABC transporter transmembrane domain-containing protein Regulator
  V8N34_RS05245 (V8N34_05245) rcrP 1086652..1088388 (-) 1737 WP_313921445.1 ABC transporter ATP-binding protein Regulator
  V8N34_RS05250 (V8N34_05250) - 1088464..1088706 (-) 243 WP_012028079.1 KH domain-containing protein -
  V8N34_RS05255 (V8N34_05255) rpsP 1088728..1089000 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  V8N34_RS05260 (V8N34_05260) - 1089185..1090207 (-) 1023 WP_172091467.1 IS30 family transposase -
  V8N34_RS05265 (V8N34_05265) - 1090300..1090596 (-) 297 WP_318825466.1 DUF4298 domain-containing protein -
  V8N34_RS05270 (V8N34_05270) pcp 1090608..1091255 (-) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  V8N34_RS05275 (V8N34_05275) - 1091252..1092007 (-) 756 WP_105243240.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65227.54 Da        Isoelectric Point: 5.3031

>NTDB_id=875494 V8N34_RS05245 WP_313921445.1 1086652..1088388(-) (rcrP) [Streptococcus suis strain YA]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWARMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLSELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=875494 V8N34_RS05245 WP_313921445.1 1086652..1088388(-) (rcrP) [Streptococcus suis strain YA]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGAGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTA
ACTACAAATATCGTCAAGGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACATTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAAAAACG
TTTGGACACCATTAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGAGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCAGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATTATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAG
GAAGGTATTACTGAAACAGATACTCGTGGCTATTTGGAATTTGAAAATGTGACCTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCATTTAAGGCTAAGCCCGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGCAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGT
TACAATCTAAAAGCACTTCGTAGTAAGATTGGTTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTTCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTGAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCATTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.736

91.869

0.365