Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V8N34_RS02430 Genome accession   NZ_CP149804
Coordinates   487870..488604 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain YA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 482870..493604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS02405 (V8N34_02405) - 483371..483679 (-) 309 WP_002938710.1 DUF1827 family protein -
  V8N34_RS02410 (V8N34_02410) - 483734..484195 (-) 462 WP_053866811.1 NUDIX hydrolase -
  V8N34_RS02415 (V8N34_02415) clpE 484381..486609 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  V8N34_RS02420 (V8N34_02420) - 486832..487062 (+) 231 WP_002938704.1 DUF1797 family protein -
  V8N34_RS02425 (V8N34_02425) - 487188..487877 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  V8N34_RS02430 (V8N34_02430) amiE 487870..488604 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  V8N34_RS02435 (V8N34_02435) - 488670..489533 (-) 864 WP_318825550.1 IS982 family transposase -
  V8N34_RS02440 (V8N34_02440) - 489703..490551 (+) 849 WP_318825551.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  V8N34_RS02445 (V8N34_02445) - 491984..492283 (+) 300 WP_023369568.1 hypothetical protein -
  V8N34_RS02450 (V8N34_02450) lepB 492273..492875 (+) 603 WP_023369570.1 signal peptidase I -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=875470 V8N34_RS02430 WP_002943067.1 487870..488604(+) (amiE) [Streptococcus suis strain YA]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=875470 V8N34_RS02430 WP_002943067.1 487870..488604(+) (amiE) [Streptococcus suis strain YA]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTAGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTACCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCGGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365