Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   V8N34_RS01105 Genome accession   NZ_CP149804
Coordinates   198923..201412 (-) Length   829 a.a.
NCBI ID   WP_172060617.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 193923..206412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS01080 (V8N34_01080) dinB 194538..195605 (+) 1068 WP_014637367.1 DNA polymerase IV -
  V8N34_RS01085 (V8N34_01085) - 195648..196067 (+) 420 WP_015646348.1 Rrf2 family transcriptional regulator -
  V8N34_RS01090 (V8N34_01090) - 196306..196932 (+) 627 WP_024383154.1 NAD(P)-dependent oxidoreductase -
  V8N34_RS01095 (V8N34_01095) - 197037..197957 (+) 921 WP_172060619.1 PfkB family carbohydrate kinase -
  V8N34_RS01100 (V8N34_01100) - 198005..198643 (+) 639 WP_172060618.1 endonuclease III domain-containing protein -
  V8N34_RS01105 (V8N34_01105) recD/recD2/recDB 198923..201412 (-) 2490 WP_172060617.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V8N34_RS01110 (V8N34_01110) lepB 201476..202105 (-) 630 WP_024384771.1 signal peptidase I -
  V8N34_RS01115 (V8N34_01115) rnhC 202115..203005 (-) 891 WP_318825581.1 ribonuclease HIII -
  V8N34_RS01120 (V8N34_01120) - 203090..204073 (+) 984 WP_024384769.1 Gfo/Idh/MocA family oxidoreductase -
  V8N34_RS01125 (V8N34_01125) - 204422..205672 (+) 1251 WP_024384768.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93027.35 Da        Isoelectric Point: 4.5797

>NTDB_id=875456 V8N34_RS01105 WP_172060617.1 198923..201412(-) (recD/recD2/recDB) [Streptococcus suis strain YA]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQITRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGITSDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRTDVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQGSKEALAEKAESKTAATTQTQPPTQPDRKEQVKVVKENSQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=875456 V8N34_RS01105 WP_172060617.1 198923..201412(-) (recD/recD2/recDB) [Streptococcus suis strain YA]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGATTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGTTGCAAATCACACGCTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGTAAAACAGCTGAAAAAAT
TGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAAGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTACCAGCGATT
CACCCCAACGCTTTCGGGCTGGTATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCACAGACGTTGAGGCTGCT
ATAGCAGAGCTGGAAAGCATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTCTGCCTTCCGCCACCATCCACCGCCACCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGTGCCCTGCCGAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCAGGTATCCCTGCAAACGAGGTACAG
ATCCTCGCGCCTATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAAGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTATATTACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGTAGCGAGTTCCAGGTCGTTATCCTTCCTATCACTCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTAATCCTCCTGGGCGAAATCTCCGCCTTCGACTATGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGGTAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGTAAAACAGCGGCAACCACACAAACCCAGCCCCCTACTCAGCCAGACAGGAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAGCCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACTATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCCTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

AAA domain (AAA_30)

(332-529)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.711

91.677

0.382