Detailed information NTG0087542

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: LTWDN19_RS09295
• Genome accession: NZ_AP024685
• Coordinates: 1803295..1804296 (+)
• Length: 333 a.a.
• NCBI ID: WP_146954924.1
• Uniprot ID: -
• Organism: Latilactobacillus curvatus strain WDN19
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1804349..1809604	1803295..1804296	flank	53

Gene organization within MGE regions

Location: 1803295..1809604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTWDN19_RS09295 (LTWDN19_18540)	comGB	1803295..1804296 (+)	1002	WP_146954924.1	type II secretion system F family protein	Machinery gene
LTWDN19_RS09300 (LTWDN19_18550)	-	1804349..1805773 (-)	1425	WP_221276417.1	recombinase family protein	-
LTWDN19_RS10830	-	1805886..1806173 (-)	288	Protein_1796	Ltp family lipoprotein	-
LTWDN19_RS09310 (LTWDN19_18570)	-	1806863..1807699 (-)	837	WP_221276418.1	hypothetical protein	-
LTWDN19_RS09315 (LTWDN19_18580)	-	1807728..1808141 (-)	414	WP_146954920.1	ImmA/IrrE family metallo-endopeptidase	-
LTWDN19_RS09320 (LTWDN19_18590)	-	1808144..1808470 (-)	327	WP_146954919.1	helix-turn-helix domain-containing protein	-
LTWDN19_RS09325 (LTWDN19_18600)	-	1808608..1808832 (+)	225	WP_146954918.1	helix-turn-helix domain-containing protein	-
LTWDN19_RS09330 (LTWDN19_18610)	-	1808829..1808993 (+)	165	WP_186738771.1	hypothetical protein	-
LTWDN19_RS09335 (LTWDN19_18620)	-	1809053..1809604 (+)	552	WP_237023253.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37887.13 Da
• Isoelectric Point: 9.6278

>NTDB_id=87542 LTWDN19_RS09295 WP_146954924.1 1803295..1804296(+) (comGB) [Latilactobacillus curvatus strain WDN19]
MKTKITVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPTHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGGLISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS

Nucleotide

• Length: 1002 bp

>NTDB_id=87542 LTWDN19_RS09295 WP_146954924.1 1803295..1804296(+) (comGB) [Latilactobacillus curvatus strain WDN19]
ATGAAGACTAAAATCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGGCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAACACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGGTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAAGGGGGCACGCTATTAGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATATGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTATTACCGCTATATCATACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (13-132)

• Type II secretion system (T2SS), protein F (T2SSF) (205-324)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Latilactobacillus sakei subsp. sakei 23K	57.27	100	0.58