Detailed information NTG0087542

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ89_RS22490
• Genome accession: NZ_AP027570
• Coordinates: 4698513..4699538 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-60
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4693513..4704538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ89_RS22480 (VEE03_43100)	rpmE	4695744..4695956 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ89_RS22485 (VEE03_43110)	priA	4696159..4698357 (+)	2199	WP_001330197.1	primosomal protein N'	Machinery gene
AABJ89_RS22490 (VEE03_43120)	cytR	4698513..4699538 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ89_RS22495 (VEE03_43130)	ftsN	4699630..4700589 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABJ89_RS22500 (VEE03_43140)	hslV	4700682..4701212 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ89_RS22505 (VEE03_43150)	hslU	4701222..4702553 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AABJ89_RS22510 (VEE03_43160)	menA	4702620..4703546 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ89_RS22515 (VEE03_43170)	rraA	4703639..4704124 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ89_RS22520 (VEE03_43180)	zapB	4704209..4704454 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=87542 AABJ89_RS22490 WP_000644904.1 4698513..4699538(+) (cytR) [Escherichia coli strain LR-60]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=87542 AABJ89_RS22490 WP_000644904.1 4698513..4699538(+) (cytR) [Escherichia coli strain LR-60]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628