Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WKW51_RS00280 Genome accession   NZ_CP149800
Coordinates   60561..61826 (+) Length   421 a.a.
NCBI ID   WP_001284003.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB7276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55561..66826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS00250 (WKW51_00250) mutY 55730..56764 (-) 1035 WP_339084356.1 A/G-specific adenine glycosylase -
  WKW51_RS00255 (WKW51_00255) - 56905..57267 (-) 363 WP_000130110.1 HIT family protein -
  WKW51_RS00260 (WKW51_00260) - 57453..58190 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  WKW51_RS00265 (WKW51_00265) - 58362..58520 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  WKW51_RS00270 (WKW51_00270) - 58715..59173 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  WKW51_RS00275 (WKW51_00275) - 59283..60455 (+) 1173 WP_000986283.1 PQQ-dependent sugar dehydrogenase -
  WKW51_RS00280 (WKW51_00280) rarA 60561..61826 (+) 1266 WP_001284003.1 replication-associated recombination protein A Machinery gene
  WKW51_RS00285 (WKW51_00285) - 61841..62680 (-) 840 WP_000349492.1 formate/nitrite transporter family protein -
  WKW51_RS00290 (WKW51_00290) - 62962..63165 (-) 204 WP_000418560.1 hypothetical protein -
  WKW51_RS00295 (WKW51_00295) purC 63358..64077 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  WKW51_RS00300 (WKW51_00300) - 64114..64716 (-) 603 WP_001177091.1 hypothetical protein -
  WKW51_RS00305 (WKW51_00305) dapA 64732..65625 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  WKW51_RS00310 (WKW51_00310) pncA 65955..66599 (+) 645 WP_025465138.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46918.57 Da        Isoelectric Point: 5.8354

>NTDB_id=875362 WKW51_RS00280 WP_001284003.1 60561..61826(+) (rarA) [Acinetobacter baumannii strain AB7276]
MSDSHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=875362 WKW51_RS00280 WP_001284003.1 60561..61826(+) (rarA) [Acinetobacter baumannii strain AB7276]
ATGTCAGACTCCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGAGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAGTCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCCACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387