Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   WJM95_RS09835 Genome accession   NZ_CP149798
Coordinates   2221045..2222778 (+) Length   577 a.a.
NCBI ID   WP_339129202.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2216045..2227778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS09825 (WJM95_09825) - 2218960..2219265 (+) 306 WP_339129200.1 YtxH domain-containing protein -
  WJM95_RS09830 (WJM95_09830) - 2219424..2220875 (+) 1452 WP_339129201.1 FGGY family carbohydrate kinase -
  WJM95_RS09835 (WJM95_09835) rcrP 2221045..2222778 (+) 1734 WP_339129202.1 ABC transporter ATP-binding protein Regulator
  WJM95_RS09840 (WJM95_09840) rcrQ 2222778..2224706 (+) 1929 WP_339129203.1 ABC transporter ATP-binding protein Regulator
  WJM95_RS09845 (WJM95_09845) - 2224798..2226102 (-) 1305 WP_339129204.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62689.99 Da        Isoelectric Point: 6.3211

>NTDB_id=875297 WJM95_RS09835 WP_339129202.1 2221045..2222778(+) (rcrP) [Streptomyces sp. f51]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMIGISLTQVVCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFRGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVLELRRHGHLEIREAGFRYPGAEEPVLRSIDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVQALENGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=875297 WJM95_RS09835 WP_339129202.1 2221045..2222778(+) (rcrP) [Streptomyces sp. f51]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCTCTGCTGGTACTGCTCCAGTTCCTCCA
GACCTGCGCCACGCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGACCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGTACGGCGTCCGCGGTGGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTGCAGTCGTTCTCGGCGCGCGAGGTGGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGCACGACGAACGACGTCCAGCAGGTGCAGATGCTCACGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCGGCGGTG
CTCGTCGCCGTCGTGCCGACCCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGACCGTTTCCGGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACCGAGAGCAGCGTGGTCCCG
CCGGTCGCACCGGTCCTGGAGCTGCGCCGCCACGGTCACCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTCAGGTCCATCGACCTGGTCGCCCGCCCCGGCGAGGTGACCGCGGTCATCGGTTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCC
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGGCTGGTCCCGCAGAAGCCCTACCTCTTCGCGGGGACCGTCGCCAC
GAACCTGCGCTACGGCAACCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCCAGGCGCTGGAGAACGGTCTCGACGCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACCCTGGTGCAGCGCCCCGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCCCTGACCGAGGAGACCGCGGAGGCAACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGGACCGGACGGCATCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.832

100

0.392