Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WJM95_RS04695 Genome accession   NZ_CP149798
Coordinates   1055699..1057054 (-) Length   451 a.a.
NCBI ID   WP_339128188.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050699..1062054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS04675 (WJM95_04675) - 1051598..1051951 (-) 354 WP_339128186.1 DUF6167 family protein -
  WJM95_RS04680 (WJM95_04680) - 1051959..1052393 (-) 435 WP_037621162.1 DUF948 domain-containing protein -
  WJM95_RS04685 (WJM95_04685) - 1052555..1054723 (+) 2169 WP_339128187.1 AAA family ATPase -
  WJM95_RS04690 (WJM95_04690) rpsD 1054763..1055377 (-) 615 WP_037621164.1 30S ribosomal protein S4 -
  WJM95_RS04695 (WJM95_04695) rarA 1055699..1057054 (-) 1356 WP_339128188.1 replication-associated recombination protein A Machinery gene
  WJM95_RS04700 (WJM95_04700) - 1057159..1057797 (-) 639 WP_339128189.1 vitamin K epoxide reductase family protein -
  WJM95_RS04705 (WJM95_04705) - 1057937..1058803 (+) 867 WP_339128190.1 ABC transporter ATP-binding protein -
  WJM95_RS04710 (WJM95_04710) - 1058800..1059645 (+) 846 WP_339128191.1 ABC transporter permease -
  WJM95_RS04715 (WJM95_04715) hisS 1059808..1061070 (-) 1263 WP_339128192.1 histidine--tRNA ligase -
  WJM95_RS04720 (WJM95_04720) - 1061081..1061794 (-) 714 WP_339128193.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48155.68 Da        Isoelectric Point: 6.7011

>NTDB_id=875289 WJM95_RS04695 WP_339128188.1 1055699..1057054(-) (rarA) [Streptomyces sp. f51]
MEPDLFTAAAEERQEKDPSGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVAEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATDKRFVELSAITAGVKEVRAVIEGARRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALDAERGLKGSVALPGDAEKHLLRIAGGDARRALTALEAAAGAALDKGEPE
ITLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PTAVAAAQAVAMIGFPEAALILSHATIALALAPKSNAATTAIGAAMEDVRKGHTGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAAQQYAPETLKDREYYAPTRHGAEARYADAVEWTRKHLGRGRA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=875289 WJM95_RS04695 WP_339128188.1 1055699..1057054(-) (rarA) [Streptomyces sp. f51]
GTGGAGCCCGACCTGTTCACCGCCGCCGCGGAAGAACGCCAGGAGAAGGACCCGTCCGGCAGCCCCCTGGCCGTACGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGGCAGCAGCATCTGCTGAAGCCGGGCTCTCCCCTGCGCAGACTCGTGGCCG
AGGGAAGCGGAGGCCCGGCCGGACCGTCCTCGGTGATCCTCTGGGGACCGCCGGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCCAAGGCCACCGACAAGCGCTTCGTGGAACTCTCCGCGATCACCGCGGGCGTCAAGGAGGTGCGTGCGGTCAT
CGAGGGTGCCCGCCGCGCCGCCGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGTTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCGGTCGAGAACCGCTGGGTGACCCTGATCGCCGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCGCCGCTGCTCTCCCGCTCCCTCCTGCTCACCCTCGAACCGCTCACCGACGACGACCTGCGCGGACTGCT
GCGCCGGGCCCTGGACGCCGAGCGCGGTCTCAAGGGGTCCGTCGCCCTGCCCGGGGACGCCGAGAAGCATCTGCTGCGCA
TCGCGGGCGGCGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCGGCGGCCGGCGCCGCCCTCGACAAGGGCGAGCCGGAG
ATCACGCTCCAGACGCTGGAGGAGACGGTCGACCGCGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCCGCCCTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGTTTCATCGCGCGCCGCCTGATGATCTCCGCGAGCGAGGACATCGGCCTCGCCGACCCGAACGCGCTG
CCCACGGCCGTGGCCGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCCGAGGCCGCGCTCATCCTCAGCCACGCCACCAT
CGCCCTCGCGCTGGCCCCCAAGTCCAACGCCGCGACCACGGCCATCGGCGCCGCCATGGAGGACGTGCGCAAGGGGCACA
CGGGCCCGGTGCCCGCCCATCTGCGCGACGGGCACTACAAGGGCGCGGCCAAGCTCGGGCACGCCCAGGGGTATGTGTAT
CCGCACGACCTGCCCGAGGGCATCGCGGCCCAGCAGTACGCGCCCGAGACGCTCAAGGACCGGGAGTACTACGCGCCGAC
CCGGCACGGCGCCGAGGCGCGGTACGCCGACGCGGTGGAGTGGACCAGGAAACACCTCGGTAGAGGACGCGCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.521

91.574

0.417