Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LTWDN19_RS04620 Genome accession   NZ_AP024685
Coordinates   863902..864459 (-) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 858902..869459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS04595 (LTWDN19_09040) - 859216..859848 (+) 633 WP_039098352.1 CPBP family intramembrane glutamic endopeptidase -
  LTWDN19_RS04600 (LTWDN19_09050) - 859901..860548 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  LTWDN19_RS04605 (LTWDN19_09060) - 860744..862687 (+) 1944 WP_065825915.1 ABC-F family ATP-binding cassette domain-containing protein -
  LTWDN19_RS04610 (LTWDN19_09070) - 862838..863197 (-) 360 WP_004265057.1 YccF domain-containing protein -
  LTWDN19_RS04615 (LTWDN19_09080) - 863304..863621 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  LTWDN19_RS04620 (LTWDN19_09090) sigH 863902..864459 (-) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  LTWDN19_RS04625 (LTWDN19_09100) - 864535..865068 (-) 534 WP_065825220.1 NYN domain-containing protein -
  LTWDN19_RS04630 (LTWDN19_09110) rlmB 865072..865959 (-) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LTWDN19_RS04635 (LTWDN19_09120) - 865946..866353 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LTWDN19_RS04640 (LTWDN19_09130) cysS 866350..867756 (-) 1407 WP_221276747.1 cysteine--tRNA ligase -
  LTWDN19_RS04645 (LTWDN19_09140) - 868298..869410 (-) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=87528 LTWDN19_RS04620 WP_039098349.1 863902..864459(-) (sigH) [Latilactobacillus curvatus strain WDN19]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=87528 LTWDN19_RS04620 WP_039098349.1 863902..864459(-) (sigH) [Latilactobacillus curvatus strain WDN19]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTATTTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAACAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment