Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WID27_RS32025 Genome accession   NZ_CP149796
Coordinates   7365042..7366412 (+) Length   456 a.a.
NCBI ID   WP_339153723.1    Uniprot ID   -
Organism   Streptomyces sp. F41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7360042..7371412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WID27_RS32005 (WID27_32005) - 7361020..7361811 (-) 792 WP_019762721.1 peptidylprolyl isomerase -
  WID27_RS32010 (WID27_32010) - 7361981..7362670 (+) 690 WP_070204844.1 MBL fold metallo-hydrolase -
  WID27_RS32015 (WID27_32015) hisS 7362687..7363949 (+) 1263 WP_070204845.1 histidine--tRNA ligase -
  WID27_RS32020 (WID27_32020) - 7364277..7364915 (+) 639 WP_070204846.1 vitamin K epoxide reductase family protein -
  WID27_RS32025 (WID27_32025) rarA 7365042..7366412 (+) 1371 WP_339153723.1 replication-associated recombination protein A Machinery gene
  WID27_RS32030 (WID27_32030) - 7366489..7367190 (-) 702 WP_019762728.1 DUF2470 domain-containing protein -
  WID27_RS32035 (WID27_32035) rpsD 7367382..7367996 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  WID27_RS32040 (WID27_32040) - 7368014..7370350 (-) 2337 WP_339153727.1 AAA family ATPase -
  WID27_RS32045 (WID27_32045) - 7370548..7371009 (+) 462 WP_070204848.1 DUF948 domain-containing protein -
  WID27_RS32050 (WID27_32050) - 7371017..7371367 (+) 351 WP_070204849.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48563.99 Da        Isoelectric Point: 6.3805

>NTDB_id=875277 WID27_RS32025 WP_339153723.1 7365042..7366412(+) (rarA) [Streptomyces sp. F41]
MEPDLFTAAAEDRQEKDPSASPLAVRMRPRGLDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDDDLRDLVRRALTDERGLGGALTLPEDAEAHLLRIAGGDARRVLTALEAAAGAALATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYIYP
HDVQGGIAAQQYAPDAVRDRRYYTPTRHGAEARYAEVVERVRERLGRQGGGPDPSS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=875277 WID27_RS32025 WP_339153723.1 7365042..7366412(+) (rarA) [Streptomyces sp. F41]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCGCCAGCCCCCTCGCTGTCCGGAT
GCGCCCCCGTGGCCTGGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCGGGCTCGCCGCTCCGCAGACTCGTCGAGG
GGAGCGGCGGCCCGGCCGGCGCCTCCTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGGAAGACGACTCTCGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTCGAACTGTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCCCGCCGCGCCTCCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCGGCCACCACGGAGAATCCGTACTTCTCG
GTGATCTCGCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCCCTGACCGACGACGACCTGCGCGATCTGGTGCG
CCGGGCGCTGACCGACGAGCGCGGCCTCGGCGGGGCGCTCACGCTGCCCGAGGACGCGGAGGCGCATCTGCTGCGCATCG
CGGGCGGCGACGCGCGCCGGGTGCTCACGGCCCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACGCACGAGGCGGAGATC
ACGCTCGAGACGGTCGAGGCCACCGTCGACCGGGCCGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCCGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGACCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTGAGCCACGCCACGATCGC
CCTCGCCCTCGCGCCGAAGTCCAACGCGGCGACGCTCGCGATCTTCGCCGCGCAGGAGGACGTACGGAAGGGGCTCGCGG
GCCCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATATCTATCCG
CATGACGTCCAGGGCGGTATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCCGCGACCGGCGGTACTACACCCCCACCCG
GCACGGCGCCGAGGCGAGATACGCGGAGGTGGTCGAGCGGGTCCGCGAGCGCCTGGGCCGCCAGGGCGGCGGCCCGGACC
CGTCGTCCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

94.737

0.417