Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RFB12_RS01280 Genome accession   NZ_CP133588
Coordinates   215310..217664 (-) Length   784 a.a.
NCBI ID   WP_309218396.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB857     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210310..222664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB12_RS01255 (RFB12_01255) alaS 210321..212954 (-) 2634 WP_062752998.1 alanine--tRNA ligase -
  RFB12_RS01260 (RFB12_01260) - 213283..214344 (-) 1062 WP_309218395.1 AI-2E family transporter -
  RFB12_RS01265 (RFB12_01265) - 214447..214581 (-) 135 WP_015864600.1 YrzQ family protein -
  RFB12_RS01270 (RFB12_01270) - 214594..214785 (-) 192 WP_015864601.1 hypothetical protein -
  RFB12_RS01275 (RFB12_01275) - 214801..215274 (-) 474 WP_062677180.1 PRC-barrel domain-containing protein -
  RFB12_RS01280 (RFB12_01280) recD2 215310..217664 (-) 2355 WP_309218396.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RFB12_RS01285 (RFB12_01285) - 217675..218343 (-) 669 WP_309218397.1 tetratricopeptide repeat protein -
  RFB12_RS01290 (RFB12_01290) mnmA 218512..219627 (-) 1116 WP_015864605.1 tRNA 2-thiouridine(34) synthase MnmA -
  RFB12_RS01295 (RFB12_01295) - 219645..220790 (-) 1146 WP_309218398.1 cysteine desulfurase family protein -
  RFB12_RS01300 (RFB12_01300) cymR 220811..221227 (-) 417 WP_015864607.1 cysteine metabolism transcriptional regulator CymR -
  RFB12_RS01305 (RFB12_01305) - 221246..221902 (-) 657 WP_309218399.1 YitT family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87789.43 Da        Isoelectric Point: 5.1436

>NTDB_id=875201 RFB12_RS01280 WP_309218396.1 215310..217664(-) (recD2) [Parageobacillus toebii strain NEB857]
MQQQESFVLGETSFIKGSYISTIFHNEANLYSVVRVRVVETNEAYDEQEVVVTGYFPKMNEHDTYIFYGKFHDHPKFGRQ
YVVEHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEALGENAISKILADPSVLDDVPKLSKQKAKELYDTLRAHEGL
EQTMIALSQFGFGPQLSMKIYQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGSHPARIRAACLFVLERDC
LQEGHVYVTKEQLMTSAKQLLEAKRSEAISEEAIEQMLLMLAEEGKLINEEGKFYIPSLYFAEKGIVTNVKRLLQQTEAV
MTFPESEFLLALGRLEERLSVQYAPLQKEAIRQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGLSLDPKDYTKDHPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPIRGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTIRLTEVYRQAEDSSIIELAHQMKNGVIPPDLTAQKADRSFIRCQTGQIAEVVRQ
IADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFNPKSEKKRELSVGDVVYRVGDKVLQLVNQPDDNVFNGDIGE
IVAIFYAKENTEKQDLVVVSFDGIEVTYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFKLGIARSDDGARQTTLTEKLQRSLAPITEGELPMEDANIGMENVSPYDFMND

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=875201 RFB12_RS01280 WP_309218396.1 215310..217664(-) (recD2) [Parageobacillus toebii strain NEB857]
TTGCAGCAACAAGAATCGTTTGTTTTAGGGGAAACATCGTTTATTAAAGGGTCATATATTTCTACGATTTTTCATAATGA
AGCAAATTTATATTCCGTCGTTCGCGTTCGAGTGGTGGAAACGAACGAAGCATATGATGAACAAGAAGTTGTTGTAACTG
GATATTTCCCCAAAATGAATGAGCATGATACGTATATTTTTTATGGAAAATTTCACGACCACCCGAAGTTCGGGCGGCAA
TATGTTGTGGAACATTTTCGGAAACAATTTCCAAACACAAAAGACGGAATCATTCATTACTTATCAAGCGATTTGTTTAA
AGGAATTGGGAAAAAAACGGCAAAAGCGATCGTCGAAGCGCTCGGCGAAAATGCTATTTCGAAAATTTTAGCGGATCCTA
GCGTATTGGACGATGTTCCGAAATTGTCAAAACAAAAAGCAAAAGAGTTGTATGATACGTTGCGTGCCCATGAAGGGTTA
GAACAAACGATGATTGCTCTTTCTCAATTTGGTTTTGGTCCGCAATTGTCGATGAAAATTTACCAAGTATATCAAGATGA
AACCCTTTCTGTTATTCAGCAAAATCCATACCAGCTTGTCGAAGATGTGGAAGGGATCGGATTTGGCCGTGCCGATGAAT
TAGGATACCGTCTTGGCATTTCCGGCAGCCATCCTGCGCGCATTCGTGCAGCTTGTTTGTTTGTGTTAGAGCGGGATTGT
CTTCAAGAAGGGCATGTTTATGTGACGAAAGAACAGCTTATGACAAGCGCGAAACAGCTTTTGGAGGCGAAACGAAGCGA
AGCGATCAGTGAGGAAGCCATCGAGCAAATGCTGTTAATGCTTGCGGAGGAAGGAAAATTAATCAATGAAGAGGGAAAAT
TTTATATTCCATCCCTTTATTTTGCCGAAAAAGGAATCGTAACCAATGTAAAACGTCTTTTGCAACAAACAGAAGCAGTG
ATGACGTTTCCGGAATCGGAATTTTTATTAGCGCTCGGAAGGCTGGAGGAACGTTTATCCGTTCAATATGCTCCCTTGCA
AAAAGAAGCCATTCGACAAGCGATTTCTTCCCCGTTATTTATTTTGACGGGTGGTCCTGGCACAGGAAAAACGACGGTGA
TTAAAGGAATCGTAGAAATTTTCGCTGATTTGCACGGTCTTTCTCTCGATCCGAAAGATTACACGAAAGATCACCCATTT
CCGATTTTGCTTGCCGCGCCGACAGGAAGGGCGGCAAAGAGAATGAGTGAAGCGACGGGATTGCCTGCTGTTACGATTCA
TCGTTTGCTTGGCTGGAATGGCGCGGAAGGCTTTACACATGATGAGGATGAGCCGATTCGCGGGAAGCTCTTAATTGTTG
ACGAAATGTCCATGGTCGATACGTGGCTGGCCAATCAGCTATTTAAGTCGATTCCGGACGGCATGCAAGTGATTCTCGTC
GGCGACGAAGATCAGCTGCCATCCGTTGGACCTGGACAAGTGTTAAAGGATTTATTACAAGCGGGTGTCATCCCGACCAT
TCGGCTAACAGAAGTATATCGGCAAGCGGAAGATTCATCGATTATTGAATTGGCGCACCAAATGAAAAATGGTGTCATCC
CCCCGGATTTAACAGCACAAAAGGCGGATCGCTCATTCATTCGCTGTCAGACAGGGCAAATTGCTGAAGTCGTCCGGCAA
ATTGCTGATAATGCGCGAAGAAAAGGCTTTGCAGTAAAAGATATTCAAGTGCTTGCGCCAATGTATCGCGGTCCTGCCGG
AATTGACCGCCTTAATCAAGTGTTGCAAGATTTGTTTAATCCAAAATCAGAGAAAAAGCGGGAACTTTCTGTCGGCGATG
TAGTGTATCGGGTTGGCGATAAGGTGCTGCAGCTTGTCAATCAGCCTGATGACAATGTATTTAATGGTGATATCGGTGAA
ATTGTCGCCATTTTTTACGCAAAAGAAAATACGGAAAAACAAGATTTAGTCGTTGTTTCTTTTGATGGCATTGAGGTAAC
GTATTCGCGGCAAGATTTGTCGCAAATTACACATGCGTATTGTTGTTCCATTCATAAATCGCAAGGAAGCGAATTTCCAA
TTGTCATTTTGCCGGTTGTAAAAAGCTATTATCGCATGTTAAAGAGAAATTTATTATATACTGCGGTGACAAGAAGCAAA
CAGTTTTTAATTTTATGTGGGGAAGAAGAAGCGTTTAAGTTAGGCATTGCCCGCAGTGATGATGGGGCTCGGCAAACAAC
GTTAACGGAAAAGTTGCAAAGATCTCTTGCACCGATTACAGAAGGAGAACTGCCGATGGAGGATGCGAACATCGGAATGG
AAAACGTTTCACCGTATGATTTTATGAACGACTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

AAA domain (AAA_30)

(343-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.396

100

0.643