Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RE438_RS22405 Genome accession   NZ_CP133557
Coordinates   4310812..4313148 (-) Length   778 a.a.
NCBI ID   WP_048562240.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4305812..4318148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS22375 (RE438_22350) - 4307552..4308382 (-) 831 WP_048562242.1 alpha/beta fold hydrolase -
  RE438_RS22380 (RE438_22355) - 4308530..4308819 (+) 290 Protein_4355 PH domain-containing protein -
  RE438_RS22385 (RE438_22360) - 4308858..4309925 (-) 1068 WP_048562241.1 AI-2E family transporter -
  RE438_RS22390 (RE438_22365) - 4310102..4310314 (+) 213 WP_000242555.1 hypothetical protein -
  RE438_RS22395 (RE438_22370) - 4310349..4310477 (-) 129 WP_001053553.1 YrzQ family protein -
  RE438_RS22400 (RE438_22375) - 4310496..4310684 (-) 189 WP_000469281.1 hypothetical protein -
  RE438_RS22405 (RE438_22380) recD2 4310812..4313148 (-) 2337 WP_048562240.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RE438_RS22410 (RE438_22385) - 4313245..4313904 (-) 660 WP_048562239.1 tetratricopeptide repeat protein -
  RE438_RS22415 (RE438_22390) mnmA 4314015..4315130 (-) 1116 WP_048562238.1 tRNA 2-thiouridine(34) synthase MnmA -
  RE438_RS22420 (RE438_22395) - 4315147..4316292 (-) 1146 WP_000439914.1 cysteine desulfurase family protein -
  RE438_RS22425 (RE438_22400) cymR 4316328..4316744 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87251.74 Da        Isoelectric Point: 5.3208

>NTDB_id=874859 RE438_RS22405 WP_048562240.1 4310812..4313148(-) (recD2) [Bacillus wiedmannii strain EPS29]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIHRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=874859 RE438_RS22405 WP_048562240.1 4310812..4313148(-) (recD2) [Bacillus wiedmannii strain EPS29]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGGTTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATCTATCAGCAATATAAAGAAAT
GACATTAGAAGTGATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGATGGGATTGGCTTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGGTGTTTTTATACGTTAGAGAATGTTTCA
TTGCAACTTGGTCATGTTTATATGGGGAAAAATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
GGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCACCGACTTATGAATCAAGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAACGTACAGTATGCACCGCTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAGACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTGCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCAGTACAAGGGAAATTGCTCATTATTGATGAGT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCGTTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCTATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGGGATGTACAAGTACTGGCCCCGATGTATCGTGGACCTGCCGGTATTAA
TGTGTTAAACGAAGCATTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGACGAGGCGATAAAGTACTACAACTAGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAATGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAGTCGCAAGGTAGTGAGTTCCCAATCGTAA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTATACAGGCATTACAAGAAGTAAAAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577