Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RE438_RS19525 Genome accession   NZ_CP133557
Coordinates   3789234..3790013 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus wiedmannii strain EPS29     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3784234..3795013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS19500 (RE438_19475) uppS 3784979..3785755 (-) 777 WP_000971311.1 isoprenyl transferase -
  RE438_RS19505 (RE438_19480) frr 3785841..3786398 (-) 558 WP_000531506.1 ribosome recycling factor -
  RE438_RS19510 (RE438_19485) pyrH 3786401..3787123 (-) 723 WP_000042667.1 UMP kinase -
  RE438_RS19515 (RE438_19490) tsf 3787190..3788077 (-) 888 WP_001018585.1 translation elongation factor Ts -
  RE438_RS19520 (RE438_19495) rpsB 3788181..3788882 (-) 702 WP_000111484.1 30S ribosomal protein S2 -
  RE438_RS19525 (RE438_19500) codY 3789234..3790013 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RE438_RS19530 (RE438_19505) hslU 3790092..3791483 (-) 1392 WP_000550070.1 ATP-dependent protease ATPase subunit HslU -
  RE438_RS19535 (RE438_19510) hslV 3791506..3792048 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  RE438_RS19540 (RE438_19515) xerC 3792091..3792990 (-) 900 WP_001101235.1 tyrosine recombinase XerC -
  RE438_RS19545 (RE438_19520) trmFO 3793056..3794360 (-) 1305 WP_000211997.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=874851 RE438_RS19525 WP_000421290.1 3789234..3790013(-) (codY) [Bacillus wiedmannii strain EPS29]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=874851 RE438_RS19525 WP_000421290.1 3789234..3790013(-) (codY) [Bacillus wiedmannii strain EPS29]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCGTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459