Detailed information NTG0874717

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: WJ038_RS05220
• Genome accession: NZ_CP149505
• Coordinates: 1117725..1119014 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain EB101
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1112725..1124014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ038_RS05205 (WJ038_05200)	lrp	1113224..1113718 (+)	495	WP_047022953.1	leucine-responsive transcriptional regulator Lrp	-
WJ038_RS05210 (WJ038_05205)	-	1113871..1116957 (+)	3087	WP_029805929.1	DNA translocase FtsK	-
WJ038_RS05215 (WJ038_05210)	lolA	1117032..1117658 (+)	627	WP_029805927.1	outer membrane lipoprotein chaperone LolA	-
WJ038_RS05220 (WJ038_05215)	rarA	1117725..1119014 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
WJ038_RS05225 (WJ038_05220)	serS	1119106..1120413 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
WJ038_RS05230 (WJ038_05225)	-	1120783..1121349 (+)	567	WP_225868813.1	ATPase	-
WJ038_RS05235	-	1121343..1121783 (+)	441	Protein_993	hypothetical protein	-
WJ038_RS05240 (WJ038_05230)	-	1121918..1122184 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
WJ038_RS05245 (WJ038_05235)	bioA	1122254..1123534 (-)	1281	WP_029845746.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=874717 WJ038_RS05220 WP_043043278.1 1117725..1119014(+) (rarA) [Vibrio parahaemolyticus strain EB101]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=874717 WJ038_RS05220 WP_043043278.1 1117725..1119014(+) (rarA) [Vibrio parahaemolyticus strain EB101]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGTCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385