Detailed information NTG0874669

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: RDV59_RS05940
• Genome accession: NZ_CP133476
• Coordinates: 1184405..1185286 (+)
• Length: 293 a.a.
• NCBI ID: WP_038675882.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LMG 11489
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1179405..1190286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV59_RS05915 (RDV59_05915)	-	1179938..1181359 (+)	1422	WP_038675879.1	DUF4832 domain-containing protein	-
RDV59_RS05920 (RDV59_05920)	galE	1181374..1182387 (+)	1014	WP_021144269.1	UDP-glucose 4-epimerase GalE	-
RDV59_RS05925 (RDV59_05925)	-	1182579..1182815 (+)	237	WP_037603973.1	DUF1146 family protein	-
RDV59_RS05930 (RDV59_05930)	murA	1182883..1184154 (+)	1272	WP_038675881.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
RDV59_RS05935 (RDV59_05935)	-	1184156..1184344 (+)	189	WP_013990684.1	DNA-directed RNA polymerase subunit beta	-
RDV59_RS05940 (RDV59_05940)	endA	1184405..1185286 (+)	882	WP_038675882.1	DNA/RNA non-specific endonuclease	Machinery gene
RDV59_RS05945 (RDV59_05945)	-	1185362..1186012 (-)	651	WP_002886253.1	amino acid ABC transporter permease	-
RDV59_RS05950 (RDV59_05950)	-	1186024..1186722 (-)	699	WP_002886251.1	amino acid ABC transporter permease	-
RDV59_RS05955 (RDV59_05955)	-	1186740..1187573 (-)	834	WP_060775855.1	transporter substrate-binding domain-containing protein	-
RDV59_RS05960 (RDV59_05960)	-	1187585..1188352 (-)	768	WP_060775856.1	amino acid ABC transporter ATP-binding protein	-
RDV59_RS05965 (RDV59_05965)	-	1188538..1189188 (-)	651	WP_002886253.1	amino acid ABC transporter permease	-
RDV59_RS05970 (RDV59_05970)	-	1189200..1189898 (-)	699	WP_002886251.1	amino acid ABC transporter permease	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31566.19 Da
• Isoelectric Point: 10.1795

>NTDB_id=874669 RDV59_RS05940 WP_038675882.1 1184405..1185286(+) (endA) [Streptococcus salivarius strain LMG 11489]
MAKRKTSLTNKQKRQLVSLLIAVLIAVLGYVGTSNKLSPNNPIKQVASLVSGKSNNYVKSNGSTSGQSTPQEQLAETVMT
SSVKSQLGNAIEWNGAGAYIVNGNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVHNLSGEYSHAVDRGHLLGYALVGGLKGFDASTSNPENIAVQTAWANQANSETSTGQNYYESLVRKAQDKNKRVR
YRVTLIYEGDNLIPSGSHLEAKSADGSLEFNVFVPNVQQGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=874669 RDV59_RS05940 WP_038675882.1 1184405..1185286(+) (endA) [Streptococcus salivarius strain LMG 11489]
ATGGCAAAAAGAAAGACATCTTTAACAAATAAACAGAAACGTCAGCTAGTCTCGTTACTGATAGCGGTTTTGATTGCAGT
TTTAGGTTACGTTGGAACGAGTAATAAGCTCTCACCTAACAATCCAATCAAGCAGGTAGCTAGTCTAGTCTCGGGAAAAT
CCAATAACTACGTCAAATCAAACGGCTCAACAAGTGGGCAGTCTACGCCACAAGAGCAACTCGCAGAGACGGTGATGACC
AGCTCTGTCAAGAGTCAACTAGGAAACGCCATAGAATGGAATGGGGCTGGTGCCTATATTGTTAACGGTAATAAAACCAA
TCTTAATGCTAAGGTATCTAGCCAACCCTACGCTAATAACCAAGTTAAAACGGTTCAAGGACAAACGGTTCCTACAGTTG
CGAATGCCTTGTTAAGTAAAGCGACCAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGCTCAACCTCTTGGACACCA
GCTGGATGGCATCAAGTTCACAATCTTTCAGGAGAGTATAGCCATGCCGTAGACCGAGGCCATTTGTTAGGTTATGCACT
TGTAGGTGGTCTCAAAGGATTTGATGCCTCGACTTCAAATCCAGAAAATATTGCCGTTCAAACTGCTTGGGCTAACCAAG
CTAATAGCGAAACTTCCACAGGCCAAAACTATTATGAAAGCCTGGTACGTAAAGCTCAGGATAAAAATAAACGTGTCCGT
TATCGCGTTACCCTCATTTATGAAGGAGATAACCTGATTCCATCAGGATCACATCTTGAAGCCAAGTCAGCAGATGGCTC
GCTTGAGTTCAACGTCTTCGTTCCAAATGTCCAACAGGGAATTACCCTAGATTATTATTCAGGGAAAGTAACGGTGAATT
AA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (99-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	69.96	86.348	0.604
endA	Streptococcus pneumoniae D39	69.96	86.348	0.604
endA	Streptococcus pneumoniae R6	69.96	86.348	0.604
endA	Streptococcus pneumoniae TIGR4	69.96	86.348	0.604