Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RDV58_RS06810 Genome accession   NZ_CP133475
Coordinates   1353701..1355503 (-) Length   600 a.a.
NCBI ID   WP_002280031.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1351957..1383134 1353701..1355503 within 0


Gene organization within MGE regions


Location: 1351957..1383134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06805 (RDV58_06795) rcrQ 1351957..1353711 (-) 1755 WP_002280030.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06810 (RDV58_06800) rcrP 1353701..1355503 (-) 1803 WP_002280031.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06815 (RDV58_06805) rcrR 1355507..1355941 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDV58_RS06820 (RDV58_06810) queC 1356493..1357146 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  RDV58_RS06825 (RDV58_06815) queD 1357146..1357592 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  RDV58_RS06830 (RDV58_06820) queE 1357589..1358305 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  RDV58_RS06835 (RDV58_06825) queF 1358318..1358806 (+) 489 WP_002280032.1 preQ(1) synthase -
  RDV58_RS06840 (RDV58_06830) - 1358915..1359298 (+) 384 WP_002265142.1 DUF3021 family protein -
  RDV58_RS06845 (RDV58_06835) gdhA 1359410..1360759 (-) 1350 WP_002280033.1 NADP-specific glutamate dehydrogenase -
  RDV58_RS06850 (RDV58_06840) - 1361406..1361915 (+) 510 WP_002262901.1 DUF308 domain-containing protein -
  RDV58_RS06855 (RDV58_06845) gtfD 1362087..1366475 (-) 4389 WP_002280370.1 glucosyltransferase-S -
  RDV58_RS06860 (RDV58_06850) - 1366696..1367616 (-) 921 WP_002280369.1 AEC family transporter -
  RDV58_RS06865 (RDV58_06855) - 1367732..1369504 (-) 1773 WP_002280368.1 ABC transporter ATP-binding protein -
  RDV58_RS06870 (RDV58_06860) - 1369515..1371251 (-) 1737 WP_002280367.1 ABC transporter ATP-binding protein -
  RDV58_RS06875 (RDV58_06865) - 1371708..1373576 (-) 1869 WP_002280366.1 ABC-F family ATP-binding cassette domain-containing protein -
  RDV58_RS06880 (RDV58_06870) - 1373579..1374784 (-) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  RDV58_RS06885 (RDV58_06875) dapB 1374781..1375548 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  RDV58_RS06890 (RDV58_06880) - 1375560..1376405 (-) 846 WP_002266545.1 DegV family protein -
  RDV58_RS06895 (RDV58_06885) - 1376411..1376785 (-) 375 WP_002262891.1 DUF1149 family protein -
  RDV58_RS06900 (RDV58_06890) - 1376894..1378435 (-) 1542 WP_002280365.1 hypothetical protein -
  RDV58_RS06905 (RDV58_06895) - 1378422..1379138 (-) 717 WP_002265102.1 ABC transporter ATP-binding protein -
  RDV58_RS06910 (RDV58_06900) - 1379213..1379818 (-) 606 WP_002280364.1 TetR/AcrR family transcriptional regulator -
  RDV58_RS06915 (RDV58_06905) - 1379981..1380484 (-) 504 WP_002280363.1 phosphatase PAP2 family protein -
  RDV58_RS06920 (RDV58_06910) - 1380725..1381804 (-) 1080 WP_002262882.1 serine hydrolase -
  RDV58_RS06925 (RDV58_06915) galE 1382070..1383071 (-) 1002 WP_002269393.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66940.71 Da        Isoelectric Point: 9.6602

>NTDB_id=874604 RDV58_RS06810 WP_002280031.1 1353701..1355503(-) (rcrP) [Streptococcus mutans strain LMG 14558]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAVFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQDYSHDDLNNKVGYIPQRAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKDMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=874604 RDV58_RS06810 WP_002280031.1 1353701..1355503(-) (rcrP) [Streptococcus mutans strain LMG 14558]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTGTCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCCAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGAATCAAAGTGCAAGATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAGGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGACATGACTAAGCTGATTGTCGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTA
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.667

100

0.997