Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABJ83_RS21925 Genome accession   NZ_AP027563
Coordinates   4483681..4484148 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain LR-58-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4478681..4489148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ83_RS21880 (VEE04_41630) rplP 4478791..4479201 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  AABJ83_RS21885 (VEE04_41640) rpsC 4479214..4479915 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  AABJ83_RS21890 (VEE04_41650) rplV 4479933..4480265 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  AABJ83_RS21895 (VEE04_41660) rpsS 4480280..4480558 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  AABJ83_RS21900 (VEE04_41670) rplB 4480575..4481396 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  AABJ83_RS21905 (VEE04_41680) rplW 4481414..4481716 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  AABJ83_RS21910 (VEE04_41690) rplD 4481713..4482318 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  AABJ83_RS21915 (VEE04_41700) rplC 4482329..4482958 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  AABJ83_RS21920 (VEE04_41710) rpsJ 4482991..4483302 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  AABJ83_RS21925 (VEE04_41720) pilD 4483681..4484148 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  AABJ83_RS21930 (VEE04_41730) bfr 4484145..4484621 (-) 477 WP_000675515.1 bacterioferritin -
  AABJ83_RS21935 (VEE04_41740) bfd 4484694..4484888 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AABJ83_RS21940 (VEE04_41750) tuf 4485071..4486255 (-) 1185 WP_000031783.1 elongation factor Tu -
  AABJ83_RS21945 (VEE04_41760) fusA 4486326..4488440 (-) 2115 WP_000124703.1 elongation factor G -
  AABJ83_RS21950 (VEE04_41770) rpsG 4488537..4489007 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=87451 AABJ83_RS21925 WP_000338336.1 4483681..4484148(+) (pilD) [Escherichia coli strain LR-58-2]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=87451 AABJ83_RS21925 WP_000338336.1 4483681..4484148(+) (pilD) [Escherichia coli strain LR-58-2]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment