Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   WJ062_RS07980 Genome accession   NZ_CP149486
Coordinates   1643418..1644092 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain EMM113     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638418..1649092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ062_RS07965 (WJ062_07940) - 1640056..1641444 (-) 1389 WP_136119849.1 HAMP domain-containing sensor histidine kinase -
  WJ062_RS07970 (WJ062_07945) - 1641441..1642094 (-) 654 WP_002991237.1 response regulator transcription factor -
  WJ062_RS07975 (WJ062_07950) - 1642188..1643405 (-) 1218 WP_136119848.1 ABC transporter permease -
  WJ062_RS07980 (WJ062_07955) amiE 1643418..1644092 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  WJ062_RS07985 (WJ062_07960) - 1644079..1645347 (-) 1269 WP_023610761.1 efflux RND transporter periplasmic adaptor subunit -
  WJ062_RS07990 (WJ062_07965) - 1645771..1646055 (-) 285 WP_002982442.1 hypothetical protein -
  WJ062_RS07995 (WJ062_07970) - 1646203..1646499 (-) 297 WP_038434311.1 DUF4298 domain-containing protein -
  WJ062_RS08000 (WJ062_07975) - 1646641..1648569 (-) 1929 WP_136119847.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=874456 WJ062_RS07980 WP_002982458.1 1643418..1644092(-) (amiE) [Streptococcus pyogenes strain EMM113]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=874456 WJ062_RS07980 WP_002982458.1 1643418..1644092(-) (amiE) [Streptococcus pyogenes strain EMM113]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGAACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCTCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366