Detailed information NTG0874351

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: HSX42_RS14495
• Genome accession: NZ_CP133461
• Coordinates: 2798925..2801288 (-)
• Length: 787 a.a.
• NCBI ID: WP_008881020.1
• Uniprot ID: A0A0Q0ZBY2
• Organism: Geobacillus thermodenitrificans strain K1041
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2793925..2806288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSX42_RS14470 (HSX42_14470)	alaS	2793936..2796572 (-)	2637	WP_236934280.1	alanine--tRNA ligase	-
HSX42_RS14475 (HSX42_14475)	-	2796889..2797950 (-)	1062	WP_008881016.1	AI-2E family transporter	-
HSX42_RS14480 (HSX42_14480)	-	2798073..2798207 (-)	135	WP_008881017.1	YrzQ family protein	-
HSX42_RS14485 (HSX42_14485)	-	2798219..2798410 (-)	192	WP_008881018.1	hypothetical protein	-
HSX42_RS14490 (HSX42_14490)	-	2798426..2798899 (-)	474	WP_008881019.1	PRC-barrel domain-containing protein	-
HSX42_RS14495 (HSX42_14495)	recD2	2798925..2801288 (-)	2364	WP_008881020.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HSX42_RS14500 (HSX42_14500)	-	2801306..2801968 (-)	663	WP_008881021.1	tetratricopeptide repeat protein	-
HSX42_RS14505 (HSX42_14505)	mnmA	2802077..2803192 (-)	1116	WP_081156967.1	tRNA 2-thiouridine(34) synthase MnmA	-
HSX42_RS14510 (HSX42_14510)	-	2803206..2804348 (-)	1143	WP_008881023.1	cysteine desulfurase family protein	-
HSX42_RS14515 (HSX42_14515)	cymR	2804371..2804787 (-)	417	WP_008881024.1	cysteine metabolism transcriptional regulator CymR	-
HSX42_RS14520 (HSX42_14520)	-	2804787..2805443 (-)	657	WP_060476075.1	YitT family protein	-

Sequence

Protein

• Length: 787 a.a.
• Molecular weight: 86348.70 Da
• Isoelectric Point: 4.9895

>NTDB_id=874351 HSX42_RS14495 WP_008881020.1 2798925..2801288(-) (recD2) [Geobacillus thermodenitrificans strain K1041]
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Nucleotide

• Length: 2364 bp

>NTDB_id=874351 HSX42_RS14495 WP_008881020.1 2798925..2801288(-) (recD2) [Geobacillus thermodenitrificans strain K1041]
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACAAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GGGCACTCGAACGTGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGACACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
GGCGGTTGATGGACAAGCTATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAAAATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGGAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGCGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• AAA domain (AAA_30) (342-549)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• Helix-hairpin-helix domain (HHH_5) (107-153)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-726)

3D structure

• AlphaFold DB: A0A0Q0ZBY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	59.925	100	0.606