Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WJ054_RS01195 Genome accession   NZ_CP149485
Coordinates   202586..203875 (-) Length   429 a.a.
NCBI ID   WP_003056985.1    Uniprot ID   A0ABU0A931
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197586..208875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS01160 (WJ054_01160) - 197881..199146 (+) 1266 WP_159335979.1 FtsK/SpoIIIE domain-containing protein -
  WJ054_RS01165 (WJ054_01165) - 199133..199270 (+) 138 WP_014611961.1 hypothetical protein -
  WJ054_RS01170 (WJ054_01170) - 199329..200624 (+) 1296 WP_014611962.1 Rep family protein -
  WJ054_RS01175 (WJ054_01175) - 200637..200984 (+) 348 WP_014611963.1 DUF771 domain-containing protein -
  WJ054_RS01180 (WJ054_01180) - 201037..202170 (+) 1134 WP_084916996.1 site-specific integrase -
  WJ054_RS01195 (WJ054_01195) rarA 202586..203875 (-) 1290 WP_003056985.1 replication-associated recombination protein A Machinery gene
  WJ054_RS01200 (WJ054_01200) - 203908..204474 (-) 567 WP_003056988.1 aminodeoxychorismate/anthranilate synthase component II -
  WJ054_RS01205 (WJ054_01205) pabB 204507..206264 (-) 1758 WP_084916998.1 aminodeoxychorismate synthase component I -
  WJ054_RS01210 (WJ054_01210) - 206465..206935 (+) 471 WP_065361446.1 DUF3013 family protein -
  WJ054_RS01215 (WJ054_01215) prmA 207006..207959 (+) 954 WP_065361447.1 50S ribosomal protein L11 methyltransferase -
  WJ054_RS01220 (WJ054_01220) - 207959..208717 (+) 759 WP_012766504.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47270.04 Da        Isoelectric Point: 7.3658

>NTDB_id=874284 WJ054_RS01195 WP_003056985.1 202586..203875(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=874284 WJ054_RS01195 WP_003056985.1 202586..203875(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTCGGACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59