Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RCI27_RS06810 Genome accession   NZ_CP133369
Coordinates   1256754..1257533 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251754..1262533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI27_RS06790 (RCI27_06790) trmFO 1252408..1253712 (+) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RCI27_RS06795 (RCI27_06795) xerC 1253778..1254677 (+) 900 WP_001101244.1 tyrosine recombinase XerC -
  RCI27_RS06800 (RCI27_06800) hslV 1254720..1255262 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  RCI27_RS06805 (RCI27_06805) hslU 1255285..1256676 (+) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  RCI27_RS06810 (RCI27_06810) codY 1256754..1257533 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RCI27_RS06815 (RCI27_06815) rpsB 1257882..1258583 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  RCI27_RS06820 (RCI27_06820) tsf 1258687..1259574 (+) 888 WP_001018576.1 translation elongation factor Ts -
  RCI27_RS06825 (RCI27_06825) pyrH 1259641..1260363 (+) 723 WP_000042669.1 UMP kinase -
  RCI27_RS06830 (RCI27_06830) frr 1260366..1260923 (+) 558 WP_000531505.1 ribosome recycling factor -
  RCI27_RS06835 (RCI27_06835) uppS 1261009..1261785 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=873648 RCI27_RS06810 WP_000421290.1 1256754..1257533(+) (codY) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=873648 RCI27_RS06810 WP_000421290.1 1256754..1257533(+) (codY) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459