Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCG25_RS07620 Genome accession   NZ_CP133269
Coordinates   1556677..1559091 (+) Length   804 a.a.
NCBI ID   WP_308083067.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1551677..1564091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS07600 (RCG25_07600) cymR 1553114..1553533 (+) 420 WP_308083063.1 cysteine metabolism transcriptional regulator CymR -
  RCG25_RS07605 (RCG25_07605) - 1553579..1554721 (+) 1143 WP_308083064.1 cysteine desulfurase family protein -
  RCG25_RS07610 (RCG25_07610) mnmA 1554762..1555880 (+) 1119 WP_308083065.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCG25_RS07615 (RCG25_07615) - 1555988..1556641 (+) 654 WP_308083066.1 tetratricopeptide repeat protein -
  RCG25_RS07620 (RCG25_07620) recD2 1556677..1559091 (+) 2415 WP_308083067.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCG25_RS07625 (RCG25_07625) - 1559124..1559600 (+) 477 WP_308083068.1 PRC-barrel domain-containing protein -
  RCG25_RS07630 (RCG25_07630) - 1559612..1559803 (+) 192 WP_308083069.1 hypothetical protein -
  RCG25_RS07635 (RCG25_07635) - 1559825..1559959 (+) 135 WP_308083070.1 YrzQ family protein -
  RCG25_RS07640 (RCG25_07640) - 1560051..1561130 (+) 1080 WP_308083071.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90897.56 Da        Isoelectric Point: 4.9596

>NTDB_id=873136 RCG25_RS07620 WP_308083067.1 1556677..1559091(+) (recD2) [Neobacillus sp. PS2-9]
MEKQDSLDLFAEQGKFVKGRPIVTIFHNEQNLYTVLRIRVDETNHSYDDKEAVVTGYFPKVHEQETYIFYGEFKDHPKFG
LQFHTNHFRKDMPQTKQGVIAYLSGELFKGIGKKTAENIVDTLGENAISKILNQPSLLDSIPKLPPDKAKSLYDTLMEHQ
GLEQVMVALNQYGFGPQISMRIYQAYKEETLGIIQKNPYQLVEDIEGVGFGRADELGYQLGISGSHPDRIKAACLYTLEN
DSLQTGHVYIHAEQLLEQVKSLLEENKRDQIEFFDISNEVIKLEEEGKLIGEEKRIYLPSLYFAEKGLVTNIHRILQQTE
YKDQFPESEFLLALGGLEERLGVQYAPTQREAIQTALMAPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYHKKG
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGLNGTEGIDHEDSNTLEGKILIVDETSMLDIWLANQLFKALPDNIQV
ILVGDEDQLPSVGPGQVLKDLLDSERIPTVRLTDIYRQAEGSSIIELAHDIKRGYLPPDVTQKKPDRSFIRCSTAQVAQV
VEKVAQNAKNKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEITFGEVKYRIGDKVLQLVNQPENNVFNG
DIGEIISIIYAKENTEKQDMIYISFEGNEVEYTRQDLNQITHAYCCSVHKSQGSEFPIVILPVTRSYYRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADELSRQTTLREKLQETILVQPKTPQNDKELDEGLSYEAELMQVNPMVGMENLTPYDF
MLND

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=873136 RCG25_RS07620 WP_308083067.1 1556677..1559091(+) (recD2) [Neobacillus sp. PS2-9]
GTGGAGAAGCAGGATTCGCTTGATTTATTTGCCGAACAAGGAAAGTTTGTAAAGGGAAGACCCATCGTTACCATCTTTCA
TAATGAACAAAACCTATATACGGTTTTACGGATACGAGTAGATGAAACAAACCATTCTTATGATGACAAAGAAGCGGTTG
TCACTGGCTATTTTCCAAAGGTACATGAGCAGGAAACGTATATCTTTTACGGAGAATTTAAAGATCATCCTAAGTTTGGT
CTGCAATTTCATACAAATCATTTCAGAAAAGATATGCCACAGACAAAGCAAGGGGTTATTGCTTATTTGTCAGGTGAACT
GTTCAAAGGGATTGGTAAGAAGACAGCAGAAAATATCGTAGATACGCTTGGGGAAAACGCCATTTCAAAAATACTTAACC
AGCCGTCGCTGCTAGATTCCATTCCTAAGCTTCCTCCTGACAAGGCTAAATCACTGTATGACACACTCATGGAGCACCAA
GGACTCGAGCAGGTCATGGTAGCTTTAAACCAATATGGGTTCGGGCCGCAGATTTCAATGCGAATTTACCAGGCATACAA
AGAGGAGACACTTGGTATTATTCAAAAGAACCCTTACCAATTAGTTGAGGATATTGAGGGAGTTGGTTTTGGCCGTGCGG
ATGAGCTTGGCTATCAGCTTGGGATATCAGGCAGTCATCCTGATCGCATCAAAGCAGCCTGTCTATATACGCTAGAAAAT
GATAGCTTGCAGACCGGTCATGTATACATACATGCTGAGCAATTACTCGAACAAGTAAAAAGTTTGTTGGAAGAAAATAA
GCGAGACCAAATTGAATTTTTCGATATTTCGAATGAAGTCATTAAGTTGGAAGAAGAAGGGAAATTAATTGGTGAAGAAA
AACGAATTTACTTGCCATCTCTATATTTTGCAGAAAAAGGTCTTGTGACTAACATTCACCGTATCTTACAGCAAACTGAA
TATAAGGATCAATTTCCTGAATCTGAGTTCTTGCTTGCTTTGGGAGGCTTGGAAGAACGCCTTGGGGTACAATATGCGCC
CACCCAAAGAGAAGCCATTCAAACGGCATTAATGGCACCAATGCTTATTTTAACTGGGGGACCTGGAACAGGTAAAACCA
CGGTTATAAAAGGAATTGTTGAGCTTTACGCTGAACTCCATGGCTGTTCGTTGGAGCCGAAGGATTATCATAAAAAGGGT
GAGCCTTTTCCATTTTTGCTTGCTGCACCAACAGGTAGAGCAGCCAAAAGAATGAGTGAATCCACCGGGCTTCCTGCGGT
AACGATTCATCGATTACTTGGTTTAAATGGGACTGAAGGAATTGACCATGAGGATTCAAATACACTTGAAGGAAAAATAT
TAATCGTAGATGAAACTTCTATGCTCGATATATGGCTTGCTAATCAATTGTTTAAGGCTCTGCCTGACAATATCCAAGTT
ATACTTGTTGGGGACGAGGATCAGCTGCCATCGGTTGGTCCTGGTCAGGTTTTAAAGGACTTGTTGGATTCAGAACGTAT
TCCGACGGTTCGATTAACCGATATTTACCGGCAGGCGGAAGGTTCATCAATCATAGAATTGGCCCATGATATAAAAAGGG
GCTATCTTCCCCCGGATGTAACACAAAAGAAGCCTGATCGTTCGTTTATCAGATGTTCTACTGCACAGGTGGCTCAAGTC
GTGGAAAAAGTAGCACAAAATGCCAAAAACAAAGGTTATTCTGCAAAGGATATCCAAGTGCTGGCGCCTATGTATAGAGG
CCCTGCAGGGATTGACCGGTTAAATGTGTTGCTACAGGAGATTTTTAATCCAAACCCTGATGGTAAACGAAAGGAAATTA
CCTTTGGAGAAGTAAAGTACCGAATTGGTGATAAGGTGCTTCAACTTGTTAATCAACCAGAGAATAATGTGTTCAACGGT
GATATTGGTGAAATTATTTCGATTATCTATGCAAAGGAAAATACGGAAAAACAAGACATGATTTATATTTCCTTTGAGGG
AAATGAAGTGGAATATACAAGGCAGGATTTGAATCAAATCACCCATGCCTATTGTTGTTCTGTCCATAAATCCCAGGGCA
GTGAATTTCCTATTGTTATACTTCCTGTAACGAGAAGTTATTACCGGATGTTGCGACGAAATTTAATCTATACAGCTATC
ACAAGAAGTAAACAATCGTTAATTCTTTGTGGAGAAGAAGATGCATTAAGAATGGGCGTAGAAAGAGCTGACGAACTTTC
AAGACAGACCACTCTTCGTGAAAAGCTTCAAGAAACAATTTTAGTACAGCCGAAGACTCCTCAAAATGATAAAGAGTTGG
ACGAAGGCTTATCCTATGAGGCAGAATTAATGCAAGTCAATCCAATGGTTGGAATGGAAAACCTTACACCTTATGATTTC
ATGCTAAATGACTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

AAA domain (AAA_30)

(345-554)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.328

99.378

0.619