Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RCG17_RS05795 Genome accession   NZ_CP133268
Coordinates   1105020..1107386 (-) Length   788 a.a.
NCBI ID   WP_308174297.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100020..1112386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS05775 (RCG17_05775) - 1101284..1101589 (-) 306 WP_308174293.1 hypothetical protein -
  RCG17_RS05780 (RCG17_05780) dtd 1101592..1102032 (-) 441 WP_308174294.1 D-aminoacyl-tRNA deacylase -
  RCG17_RS05785 (RCG17_05785) - 1102053..1104248 (-) 2196 WP_308174295.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RCG17_RS05790 (RCG17_05790) - 1104517..1105029 (-) 513 WP_308174296.1 adenine phosphoribosyltransferase -
  RCG17_RS05795 (RCG17_05795) recJ 1105020..1107386 (-) 2367 WP_308174297.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RCG17_RS05800 (RCG17_05800) secDF 1107649..1109910 (-) 2262 WP_308174298.1 protein translocase subunit SecDF -
  RCG17_RS05805 (RCG17_05805) - 1110025..1110321 (-) 297 WP_308174299.1 post-transcriptional regulator -
  RCG17_RS05810 (RCG17_05810) spoVB 1110449..1112011 (+) 1563 WP_308174300.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88598.73 Da        Isoelectric Point: 5.9418

>NTDB_id=873079 RCG17_RS05795 WP_308174297.1 1105020..1107386(-) (recJ) [Neobacillus sp. PS3-12]
MLKSKTRWKVRTSDEQKVETLVNDLKITPLVASILVNRGFDTVDSARYFLFENDQFHDPFLFKGMDQAVNRIKEAIKNQE
PILIFGDYDGDGVSSTTVLMITLKDLGANVDFYIPNRFREGYGPNEVAFRHAAEIGIKLIITVDTGVAAVHEANVAKELG
MDLIITDHHEPGPELPEALAIIHPKLPTSTYPFRELAGVGVAFKLAHALYGKVPEHLLEIAVIGTVSDLVSLTGENRLIV
KKGLEKLKTTKNIGLKAIFKQAGVDQKTVTEETIGFTLAPRINAVGRLEDADLAVRLLLTDDPEEAQDLAAEMESLNKAR
QTIVNAITTEAIEEVESNFPVDQNNVLVIGREGWNPGVIGIVASRLVEKFYRPVIVLNFDMEKGLAKGSARSIAGFDLFK
NLSFCRELLPHFGGHPMAAGMTLKIDDVAELRSRLNKLASEQLTKEDYIPITWLDSEIKLDSINIGTLDQINLLSPFGVD
NPKPKVLVDSVHIANMKKIGSDSTHLKLTIEEKGANLDGVGFGLGSLADQISPVEKISLIGELTINEWNNIRKPQIFIHD
VTVKSWQLFDYRGGSRLKNLRSMVPKENRKWIFFDKEHYEKFISSLEPNETFLIDTKEQAELMNIAQANIVFVDLPSSEE
TIGKLIKGKNPARIYACFLKKSSDFLSTIPTRDHFKWYYAFLLKQGTINLTKYGDAIAKKRGWTRETIFFMSRVFSELDF
VTINNGLITLTKQALKRDLTDSRTYRLKQEQCSLESELLFSSFQQLKNWFNQYLDESVTNEEAIKEWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=873079 RCG17_RS05795 WP_308174297.1 1105020..1107386(-) (recJ) [Neobacillus sp. PS3-12]
ATGTTAAAGTCAAAAACCAGATGGAAAGTACGCACGTCCGACGAACAAAAAGTTGAAACACTTGTAAATGATTTGAAAAT
AACACCTCTTGTTGCTTCAATCCTTGTCAACCGTGGCTTTGATACCGTTGATTCTGCACGGTATTTTTTATTTGAAAATG
ATCAATTCCATGATCCTTTTTTATTTAAAGGAATGGATCAAGCTGTAAATCGAATCAAGGAAGCCATAAAAAATCAAGAG
CCAATCCTCATTTTTGGTGATTATGACGGGGATGGGGTTAGCAGTACAACGGTGTTAATGATAACGTTAAAAGATCTAGG
TGCAAATGTTGATTTTTATATTCCAAATCGCTTTAGAGAAGGCTATGGTCCCAATGAAGTAGCTTTTCGCCATGCAGCAG
AAATAGGAATTAAATTAATTATAACGGTCGATACCGGCGTTGCTGCCGTTCACGAAGCAAATGTAGCGAAGGAGCTGGGG
ATGGATTTGATTATTACAGACCACCATGAACCAGGTCCAGAATTGCCGGAAGCATTGGCAATTATCCATCCTAAACTACC
GACAAGCACATATCCCTTTCGTGAACTGGCTGGTGTTGGCGTTGCTTTTAAGCTGGCCCATGCCCTCTATGGAAAGGTTC
CAGAGCATTTATTGGAAATAGCCGTCATCGGCACAGTTTCTGATTTAGTTTCCTTAACAGGAGAAAATCGGTTAATCGTT
AAAAAAGGGTTAGAAAAACTTAAAACGACTAAAAATATTGGTCTTAAAGCAATTTTTAAACAAGCTGGTGTAGACCAAAA
GACGGTAACGGAAGAAACGATTGGTTTTACCCTTGCGCCAAGAATTAATGCAGTCGGCCGCCTTGAAGATGCAGACCTTG
CAGTTAGACTGTTATTGACAGACGACCCTGAGGAAGCACAGGATCTAGCGGCAGAAATGGAAAGCCTAAATAAAGCAAGG
CAAACAATCGTAAATGCAATCACAACCGAGGCTATTGAAGAAGTGGAAAGCAACTTTCCTGTCGACCAGAATAACGTGCT
TGTTATTGGGAGAGAAGGATGGAATCCTGGGGTTATCGGGATTGTCGCTTCCCGACTGGTGGAAAAATTCTATCGTCCAG
TGATTGTTTTAAACTTTGATATGGAAAAAGGATTAGCAAAAGGATCGGCGCGCAGTATAGCAGGGTTTGACCTTTTTAAA
AACTTGTCCTTTTGTCGTGAATTGCTGCCACACTTTGGCGGTCACCCGATGGCTGCAGGTATGACCTTAAAAATAGATGA
TGTAGCAGAGCTTCGTTCTCGTCTAAATAAACTCGCAAGTGAACAATTGACTAAGGAAGATTATATTCCGATTACATGGC
TTGATTCTGAAATCAAGTTAGATTCGATTAATATAGGAACACTCGATCAAATAAACCTTCTATCCCCTTTTGGGGTGGAC
AATCCAAAGCCAAAAGTTTTGGTAGACAGTGTCCATATTGCGAACATGAAAAAAATCGGGAGCGATTCTACTCATTTGAA
GCTCACAATCGAGGAAAAGGGTGCAAACCTTGATGGCGTTGGGTTTGGCCTGGGTTCTTTAGCTGATCAGATTTCACCGG
TTGAAAAGATATCCTTAATTGGTGAACTAACCATAAACGAATGGAATAATATTCGGAAACCGCAAATATTTATTCATGAT
GTGACGGTAAAGTCATGGCAGTTATTTGATTATCGAGGCGGGAGTCGGCTAAAGAACCTTCGTTCGATGGTGCCGAAAGA
AAATCGGAAATGGATCTTTTTCGATAAGGAACATTATGAAAAATTTATATCCTCTCTCGAACCTAATGAGACATTTCTAA
TTGATACGAAGGAACAGGCTGAATTAATGAATATTGCCCAGGCAAATATTGTTTTTGTAGACCTTCCTTCTTCAGAGGAG
ACCATAGGGAAGTTGATCAAAGGTAAAAATCCTGCTCGGATTTATGCCTGTTTTCTAAAAAAATCAAGTGATTTCTTAAG
CACAATTCCAACAAGGGATCATTTTAAATGGTATTATGCCTTTCTTTTGAAGCAGGGAACGATAAATTTGACAAAATATG
GTGATGCTATTGCCAAAAAACGCGGCTGGACAAGAGAAACGATTTTCTTTATGTCAAGGGTGTTTTCTGAATTGGATTTT
GTTACAATAAACAATGGACTGATTACTTTAACAAAGCAAGCGCTAAAGCGCGATTTAACTGACTCAAGGACATATCGATT
AAAACAGGAACAATGCTCTCTTGAAAGTGAATTGCTGTTTTCTTCCTTTCAGCAATTGAAAAACTGGTTCAATCAATACC
TGGACGAGTCAGTGACGAATGAGGAGGCAATAAAAGAATGGACTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(310-438)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.69

99.746

0.536