Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCG17_RS05710 Genome accession   NZ_CP133268
Coordinates   1086899..1089298 (-) Length   799 a.a.
NCBI ID   WP_308174282.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1081899..1094298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS05685 (RCG17_05685) - 1083885..1084889 (-) 1005 WP_308174277.1 AI-2E family transporter -
  RCG17_RS05690 (RCG17_05690) - 1084988..1085122 (-) 135 WP_308174278.1 YrzQ family protein -
  RCG17_RS05695 (RCG17_05695) - 1085137..1085328 (-) 192 WP_308174279.1 hypothetical protein -
  RCG17_RS05700 (RCG17_05700) - 1085341..1085817 (-) 477 WP_308174280.1 PRC-barrel domain-containing protein -
  RCG17_RS05705 (RCG17_05705) - 1085980..1086681 (+) 702 WP_308174281.1 peptidoglycan recognition family protein -
  RCG17_RS05710 (RCG17_05710) recD2 1086899..1089298 (-) 2400 WP_308174282.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCG17_RS05715 (RCG17_05715) - 1089323..1089976 (-) 654 WP_308174283.1 tetratricopeptide repeat protein -
  RCG17_RS05720 (RCG17_05720) mnmA 1090072..1091190 (-) 1119 WP_308174284.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCG17_RS05725 (RCG17_05725) - 1091230..1092371 (-) 1142 Protein_1118 cysteine desulfurase family protein -
  RCG17_RS05730 (RCG17_05730) cymR 1092404..1092823 (-) 420 WP_308174285.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90426.31 Da        Isoelectric Point: 4.8954

>NTDB_id=873078 RCG17_RS05710 WP_308174282.1 1086899..1089298(-) (recD2) [Neobacillus sp. PS3-12]
MEVQDSLDLFSEKEKFVKGRHLVTIFHNESNLYTVLRIRIEETNEQYEDKEAVVTGYFPKIHEQESYIFYGAFKEHPRFG
MQFHATHFRKDMPQTKQGVAAYLSSEMFKGIGKKTAENIVETLGENAISKILNQPSLLDTVPKLPPEKAKLLYDTLMEHQ
GLEQVMIALNQYGFGPQLSMKIYQAYKEETLNVIRKNPYQLVEDVEGIGFGRADELGYQLGISGNHPDRIKAGCLYTLEN
ESIQNGHVYILTQDLLEKVKQLLEENNRDQIEFMDISNEVIKLQEEGKLVVEEKRVYLPSLNFAEKGLVTHIKRILSQTD
YEDQFPESEFLLALGSLEERLGVQYAPTQKDAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYHKKE
QPFPILLAAPTGRAAKRMSESTGLPGVTIHRLLGFNGTEGFDHDDTSPLEGKLLIVDETSMVDIWLANQLFKALPENIQV
ILVGDEDQLPSVGPGQVLKDLLASERIPTVRLTDIYRQAEGSSIIELAHEIKDGHLPQNISVQQPDRSFIKCSTTQLSQV
VEKVALNAKTKGYSVKDIQVLAPMYRGPAGIDRLNHLLQEIFNPNPDGTRKEITFGEIKYRIGDKVLQLINQPESNVFNG
DIGEIVSIFYAKENTEKTDMVVISFEGNEVTYTRQDLGQITLAYCCSVHKSQGSEFPIVILPVSRSYYRMLRRKLIYTAI
TRSKQFLILCGEEDALRMGVERADEENRQTTLCEKLQEAIFVKSDKLKEVVLQEDLSYEEMLMSTDPMIGMENLTPYDF

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=873078 RCG17_RS05710 WP_308174282.1 1086899..1089298(-) (recD2) [Neobacillus sp. PS3-12]
ATGGAGGTTCAAGATTCACTTGACTTGTTTTCGGAAAAAGAAAAATTCGTTAAGGGAAGGCATCTGGTAACGATTTTTCA
TAATGAATCGAACTTATACACCGTTTTAAGAATTCGCATTGAAGAGACAAATGAACAGTATGAAGACAAGGAAGCCGTCG
TTACTGGCTATTTTCCAAAAATCCATGAACAGGAATCCTATATTTTTTACGGCGCCTTTAAAGAACATCCAAGGTTTGGC
ATGCAGTTTCATGCCACTCACTTTCGGAAAGACATGCCGCAAACAAAGCAAGGAGTTGCCGCTTACCTTTCAAGTGAAAT
GTTCAAAGGAATTGGGAAAAAAACTGCTGAGAATATTGTAGAAACACTTGGTGAGAATGCGATTTCTAAAATTCTAAACC
AGCCCTCCTTACTTGATACAGTCCCCAAACTCCCTCCCGAAAAAGCAAAATTGCTTTATGATACATTAATGGAACATCAA
GGGCTCGAACAGGTAATGATTGCCTTAAACCAATATGGTTTTGGTCCGCAGCTTTCGATGAAGATTTATCAAGCGTATAA
AGAAGAAACGCTAAATGTCATTCGAAAAAATCCTTATCAGCTTGTTGAGGATGTTGAAGGGATCGGCTTTGGTCGGGCAG
ATGAGCTTGGTTATCAGCTAGGGATATCAGGAAATCATCCTGACCGTATCAAAGCAGGATGTCTATATACACTGGAAAAT
GAAAGCATCCAAAATGGCCATGTTTACATTTTGACTCAGGATTTATTGGAGAAAGTAAAACAACTTCTCGAAGAAAACAA
TCGGGACCAAATTGAATTTATGGATATTTCGAATGAGGTCATTAAGCTTCAAGAAGAAGGAAAACTGGTTGTTGAGGAAA
AAAGAGTTTATCTGCCTTCATTAAATTTTGCCGAAAAAGGCCTTGTCACTCATATTAAACGGATACTTTCCCAAACCGAT
TATGAGGACCAATTCCCAGAATCAGAGTTTCTCCTTGCCCTTGGAAGCTTGGAGGAAAGATTAGGGGTACAATATGCGCC
AACTCAAAAGGATGCCATTCAGACTGCGTTAATGTCACCAATGCTTATTTTAACAGGTGGCCCCGGAACTGGGAAAACAA
CAGTCATTAAAGGGATTGTTGAGTTATACGCTGAACTGCATGGCTGCTCATTGGATCCGAAAGATTACCATAAAAAAGAA
CAACCTTTTCCAATTTTACTAGCTGCGCCAACTGGAAGAGCTGCAAAACGGATGAGTGAATCAACTGGATTGCCGGGGGT
GACGATTCATCGGTTACTTGGCTTTAATGGGACTGAAGGTTTTGATCATGATGATACTAGTCCTCTTGAAGGTAAGCTTC
TGATTGTTGATGAAACTTCAATGGTGGATATCTGGCTCGCCAATCAGTTATTTAAAGCATTACCGGAAAATATTCAAGTG
ATTCTCGTAGGTGATGAGGACCAATTACCATCCGTTGGACCAGGGCAGGTCCTTAAGGATTTGTTAGCTTCTGAGCGGAT
TCCAACCGTAAGATTAACAGATATTTATCGGCAGGCGGAGGGGTCATCGATCATCGAACTTGCTCATGAAATAAAAGATG
GACATCTGCCCCAAAATATATCAGTGCAGCAGCCTGATCGTTCATTTATAAAATGCTCCACAACACAGCTTTCCCAGGTT
GTTGAAAAGGTAGCATTGAATGCGAAGACGAAGGGTTATTCTGTAAAAGATATTCAAGTGCTTGCTCCCATGTACAGGGG
GCCTGCTGGGATTGACCGCCTCAACCACTTACTTCAGGAGATTTTTAATCCCAACCCTGATGGAACGAGGAAGGAAATAA
CCTTTGGTGAAATAAAATATCGAATTGGAGACAAAGTTCTTCAGTTGATAAATCAGCCTGAAAGCAATGTTTTCAATGGT
GATATTGGTGAGATTGTATCCATCTTTTATGCCAAGGAAAATACGGAAAAAACAGATATGGTGGTCATCTCCTTTGAAGG
TAATGAAGTGACATATACCCGCCAGGATTTAGGCCAAATCACGCTTGCCTATTGCTGTTCTGTTCACAAATCGCAAGGAA
GCGAGTTCCCGATTGTTATTCTTCCTGTTTCGCGAAGCTATTATCGAATGTTAAGGCGGAAATTAATTTACACGGCAATT
ACCAGGAGTAAACAATTTCTGATTTTATGCGGCGAAGAGGATGCCCTAAGGATGGGAGTAGAAAGAGCAGATGAGGAGAA
TCGGCAAACCACACTTTGCGAAAAACTCCAAGAAGCAATCTTTGTTAAAAGTGATAAACTTAAAGAAGTAGTTTTGCAAG
AAGATCTTTCCTATGAAGAAATGCTCATGAGTACAGACCCGATGATTGGTATGGAAAACCTAACGCCTTATGATTTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.61

99.75

0.625