Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RCG20_RS06315 Genome accession   NZ_CP133266
Coordinates   1222256..1224610 (-) Length   784 a.a.
NCBI ID   WP_308183386.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217256..1229610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS06300 (RCG20_06300) dtd 1218752..1219195 (-) 444 WP_308183383.1 D-aminoacyl-tRNA deacylase -
  RCG20_RS06305 (RCG20_06305) - 1219207..1221402 (-) 2196 WP_308183384.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RCG20_RS06310 (RCG20_06310) - 1221744..1222256 (-) 513 WP_308183385.1 adenine phosphoribosyltransferase -
  RCG20_RS06315 (RCG20_06315) recJ 1222256..1224610 (-) 2355 WP_308183386.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RCG20_RS06320 (RCG20_06320) secDF 1224686..1226953 (-) 2268 WP_308183387.1 protein translocase subunit SecDF -
  RCG20_RS06325 (RCG20_06325) - 1227077..1227373 (-) 297 WP_308183388.1 post-transcriptional regulator -
  RCG20_RS06330 (RCG20_06330) spoVB 1227502..1229064 (+) 1563 WP_308183389.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87642.52 Da        Isoelectric Point: 4.8694

>NTDB_id=873003 RCG20_RS06315 WP_308183386.1 1222256..1224610(-) (recJ) [Neobacillus sp. PS3-40]
MLKSKTRWIVQKSDDQKVETLVNELKITPLVASMLINRGLDTVETAQYFLYGKDQFHDPYLLEGMEKSVSRILEAIEKKE
PILIYGDYDADGVSSTTVLMITLRDLGADVQFYIPNRFSEGYGPNEKAFRHAAESGIKLIITVDTGIAAIHEANVAKQIG
LDLIITDHHEPGPVLPVALAIIHPKLADSTYPFRELAGVGVAFKLAHALYGRVPEHLLEIAVIGTIADLVSLKGENRLIA
KKGLENLKDTKNLGLRAILKISSVDPMSINEETIGFTLAPRINAVGRLASADLAVQLLLTDDPDEADDLAAEMDAMNKTR
QSIVNSITAEAIEEVEKNFPIAENKVLVIGKEGWNPGVVGIVASRLVDKYYRPTIILCYDAEKGLAKGSARSIAGFDLFQ
NLSTCREILPHFGGHPMAAGMTLNVDDVDDLRNRLNNLANDQLSDGDLIPNTLLDLEIQLPAIDLPTLDEINLLSPFGMD
NPKPKVVINEVQISSIRKIGSDQNHLKITLADQESSLDGVGFGLGSLFDHISPTSKVSLIGELTINEWNNMRKPQIFIHD
MAIKSWQLFDFRGVNRISNIQEFVPDENRICILFNKETYGKLTPVLKNEAIFIQTTEEAKNLSIDDSNIVFVDLPPSKEI
VYQLINCKKPARIYAYFYKETSDFFSTLPTRDHFKWFYGLLLKKGPIDLNRYGDTIAKNKGWSKETIFFLSQVFSELDFV
TIDKGIITLKKQAPKRDLTDSRTYQIKQGLYALERDLLLSSFQQLKDWFDFSLQESVEIEEVTE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=873003 RCG20_RS06315 WP_308183386.1 1222256..1224610(-) (recJ) [Neobacillus sp. PS3-40]
ATGTTAAAGTCGAAAACAAGATGGATTGTTCAAAAATCCGATGACCAAAAGGTTGAAACACTTGTAAATGAATTGAAAAT
TACTCCTTTAGTTGCTTCGATGCTTATCAATCGTGGACTTGATACTGTTGAAACAGCCCAGTATTTTTTATATGGAAAAG
ATCAGTTTCATGACCCTTATTTACTAGAAGGAATGGAAAAGTCAGTTTCAAGAATTTTAGAAGCGATAGAAAAGAAGGAA
CCGATTCTTATCTATGGCGATTACGATGCCGATGGAGTCAGTAGCACAACGGTTTTAATGATAACCCTTCGTGACTTAGG
GGCAGATGTGCAGTTTTATATTCCAAATCGTTTTTCAGAGGGATATGGTCCTAATGAAAAGGCATTTCGCCATGCGGCAG
AATCAGGAATCAAATTAATTATTACGGTGGATACAGGAATTGCTGCAATTCATGAAGCAAATGTTGCAAAACAAATAGGG
CTTGATTTAATTATTACTGATCATCACGAGCCAGGGCCAGTATTACCCGTGGCACTTGCTATCATCCATCCAAAACTAGC
TGACAGTACTTATCCGTTCCGGGAACTTGCCGGTGTTGGAGTTGCTTTTAAATTAGCACATGCACTATATGGACGTGTCC
CAGAACATCTACTTGAAATAGCGGTAATTGGAACGATTGCCGATTTAGTTTCATTAAAAGGCGAAAATCGATTGATTGCA
AAAAAAGGATTAGAAAATCTTAAAGATACAAAAAATCTTGGATTAAGGGCTATTTTAAAAATATCCAGTGTTGATCCAAT
GTCAATTAATGAGGAAACAATTGGTTTTACCCTCGCCCCAAGGATTAATGCAGTTGGACGCTTAGCGAGTGCTGATCTTG
CTGTACAACTATTATTAACTGACGACCCCGATGAGGCTGATGACTTAGCAGCTGAAATGGATGCTATGAATAAAACCAGG
CAATCCATTGTCAATAGTATAACGGCTGAGGCAATAGAAGAAGTGGAAAAGAATTTCCCTATTGCTGAAAACAAGGTCCT
TGTCATTGGCAAAGAAGGTTGGAATCCCGGGGTAGTTGGGATCGTTGCATCAAGATTAGTGGATAAGTATTACAGACCGA
CAATCATTCTTTGTTATGATGCTGAAAAAGGGCTTGCTAAAGGGTCTGCACGAAGCATAGCGGGTTTTGACCTATTTCAA
AATTTATCGACTTGTCGAGAGATATTACCGCATTTTGGTGGGCATCCAATGGCTGCAGGGATGACATTAAATGTTGATGA
TGTGGATGATCTGCGCAATCGCTTAAATAACCTTGCAAATGATCAGCTTTCAGACGGAGATCTCATTCCGAATACATTGC
TTGATCTGGAAATTCAGCTCCCTGCGATTGATTTGCCAACCTTGGATGAGATAAATCTACTGTCTCCTTTTGGAATGGAT
AACCCGAAACCAAAAGTGGTTATTAATGAAGTTCAGATTTCAAGTATAAGGAAAATTGGCAGTGACCAGAACCATTTAAA
GATTACCTTAGCTGATCAAGAATCCAGTCTAGATGGAGTAGGGTTTGGATTAGGATCATTATTTGATCATATTTCCCCGA
CATCTAAGGTTTCTCTAATTGGAGAATTGACAATAAATGAATGGAACAACATGCGAAAACCGCAGATTTTTATTCATGAT
ATGGCGATTAAATCCTGGCAATTATTTGATTTCAGAGGTGTGAACCGAATAAGCAATATACAGGAATTCGTTCCGGATGA
AAATAGAATATGTATTCTTTTTAATAAGGAAACATATGGAAAATTAACTCCTGTCTTAAAAAATGAAGCTATTTTTATCC
AAACTACTGAGGAAGCAAAGAATCTTAGTATAGATGATTCCAATATCGTTTTTGTTGATCTTCCACCCTCAAAGGAAATA
GTATATCAACTTATCAATTGTAAAAAGCCTGCAAGAATATATGCTTATTTTTACAAAGAAACAAGTGATTTCTTTAGTAC
TCTTCCAACCAGAGATCATTTTAAGTGGTTTTATGGATTGCTTCTTAAAAAAGGGCCAATTGATCTGAATCGTTATGGAG
ATACTATTGCTAAAAATAAAGGCTGGTCGAAGGAAACAATTTTCTTTTTGTCACAGGTGTTTTCCGAATTGGATTTTGTT
ACAATAGACAAGGGAATTATCACTTTAAAGAAACAAGCGCCAAAGCGCGATTTAACAGACTCAAGAACCTATCAAATAAA
GCAGGGATTATACGCTCTCGAAAGAGATTTGCTATTATCATCATTCCAGCAATTAAAGGACTGGTTTGACTTTAGTCTTC
AAGAGTCGGTTGAAATTGAGGAGGTAACAGAATAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(316-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.739

100

0.528