Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RCG19_RS03045 Genome accession   NZ_CP133265
Coordinates   569094..571457 (-) Length   787 a.a.
NCBI ID   WP_308109615.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564094..576457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS03025 (RCG19_03025) - 564319..565647 (+) 1329 WP_308109612.1 IS3 family transposase -
  RCG19_RS03030 (RCG19_03030) dtd 565712..566155 (-) 444 WP_308109613.1 D-aminoacyl-tRNA deacylase -
  RCG19_RS03035 (RCG19_03035) - 566172..568367 (-) 2196 WP_308109614.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RCG19_RS03040 (RCG19_03040) - 568591..569103 (-) 513 WP_166238741.1 adenine phosphoribosyltransferase -
  RCG19_RS03045 (RCG19_03045) recJ 569094..571457 (-) 2364 WP_308109615.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RCG19_RS03050 (RCG19_03050) ltrA 571608..573044 (-) 1437 WP_308108194.1 group II intron reverse transcriptase/maturase -
  RCG19_RS03055 (RCG19_03055) secDF 573852..576116 (-) 2265 WP_308109616.1 protein translocase subunit SecDF -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88008.76 Da        Isoelectric Point: 4.9640

>NTDB_id=872954 RCG19_RS03045 WP_308109615.1 569094..571457(-) (recJ) [Neobacillus sp. OS1-2]
MLQSKTRWIVRSTDDNLVNMLANELKITPLVASLLVNRGLDTVESARYFLFGKDGFHDPYLLKGMDLAVDRIREAIEAHE
PILIYGDYDADGVSSTSVLMITLRDLGANVDFYIPNRFTEGYGPNEAAFRQAAENGIKLIITVDTGISAVHEAAIAKELG
IDLIITDHHEPGPVLPVALAIIHPKHPESIYPFRELAGVGVAFKLAQALYGKVPEHLFEIAVIGTIADLVSLKDENRLIA
KKGLENLKASQNIGLKAILKLAGVDPMGINEETIGFTLAPRINAVGRLEDADLAVQLILTEDPEEAQQLAEEMDALNKTR
QAIVNTITEEAIEEVEKNFPTTSNKVLVIGKEGWNAGVIGIVASKLVEKYYRPTIVLNIDPEKGVAKGSARSIAGFDLFK
NLSTCRELLPHFGGHSMAAGMTLKLEDVAELRTRLNLLAEEQLTAEDFIPVTYLDEEVLLENIHLSALEELNLLSPFGMD
NPKPKVLIKNVDLANMRKIGNEQKHLKVIVNDGSANLDGVGFGLGALADQISPVSQISLIGELSINEWNNIRKPQIFIHD
LMVESWQLFDYRGQKRINSMAHTVPVENRKFILFNKDHFDNINADLKAESILIQNLDDAKAFDGYRANIALVDFPPSKEI
LKVLFEGRQPSRIYAYFYKESSDFFSTVPTREHFKWYYGYLKKNGPIDLKRHGDVIAKHRGWSQETLYFMSKVFSELDFV
TINNGFITLKTGAQKRDLADSITYQTKKSQYALERDLLFSSFQELKGWFDQVIQESVETEEAITEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=872954 RCG19_RS03045 WP_308109615.1 569094..571457(-) (recJ) [Neobacillus sp. OS1-2]
ATGTTACAGTCGAAAACAAGATGGATTGTTCGCAGTACTGATGACAATCTAGTCAATATGCTGGCAAATGAATTGAAAAT
AACACCTTTAGTTGCGTCATTGCTTGTCAATCGCGGCTTGGATACCGTAGAATCTGCACGGTATTTTTTATTTGGAAAAG
ATGGATTCCATGACCCTTACCTACTAAAAGGGATGGATCTTGCCGTTGATAGAATACGTGAAGCGATTGAAGCACATGAA
CCGATTCTTATTTATGGTGATTATGATGCTGACGGTGTAAGCAGTACATCGGTATTGATGATCACACTTCGTGATCTGGG
TGCCAATGTCGATTTTTACATCCCGAATCGCTTTACAGAAGGATATGGCCCCAATGAAGCAGCATTCAGGCAAGCAGCGG
AAAATGGAATAAAGTTGATTATTACCGTGGATACTGGAATATCAGCCGTTCACGAAGCCGCCATTGCGAAAGAACTGGGA
ATTGATCTCATCATTACCGACCATCATGAACCTGGGCCGGTTTTGCCTGTTGCGCTTGCCATTATTCACCCAAAACATCC
CGAAAGTATCTATCCATTTCGGGAGCTTGCAGGTGTAGGGGTTGCTTTTAAATTAGCTCAAGCTCTTTACGGAAAAGTTC
CTGAGCATTTGTTTGAAATTGCCGTTATTGGGACGATAGCGGATTTAGTATCATTAAAAGATGAAAACCGCCTAATAGCC
AAAAAAGGTCTTGAAAATCTGAAGGCTTCACAAAATATTGGACTTAAAGCGATTCTTAAATTGGCAGGGGTCGATCCGAT
GGGAATCAATGAAGAAACCATTGGCTTTACGCTTGCACCAAGGATTAATGCAGTCGGTAGATTAGAAGATGCCGATTTAG
CCGTTCAACTGATTTTGACTGAAGACCCAGAAGAGGCACAACAACTTGCGGAAGAAATGGACGCTTTAAATAAAACGAGG
CAAGCCATTGTTAATACCATTACCGAAGAAGCCATTGAGGAGGTGGAAAAGAACTTTCCAACAACCTCCAATAAGGTCCT
CGTTATCGGTAAGGAAGGCTGGAATGCCGGTGTTATTGGGATCGTTGCCTCCAAGCTTGTGGAAAAATACTATCGGCCGA
CGATTGTATTGAATATTGATCCGGAAAAAGGAGTAGCAAAGGGCTCGGCACGGAGTATTGCCGGCTTTGATTTATTTAAA
AATCTATCCACTTGCCGGGAATTACTCCCCCACTTTGGCGGGCACTCAATGGCTGCAGGAATGACATTAAAGCTAGAAGA
TGTTGCCGAGCTGCGTACAAGATTAAATCTGCTCGCGGAAGAGCAGTTAACAGCGGAGGATTTTATTCCCGTTACCTATC
TTGATGAAGAAGTTCTGCTTGAAAATATTCATTTATCTGCACTTGAAGAATTAAATTTGCTTTCTCCTTTTGGAATGGAC
AACCCTAAACCAAAAGTTTTAATAAAAAATGTCGATCTTGCCAATATGAGAAAGATTGGCAATGAGCAGAAGCACTTAAA
GGTAATTGTAAATGATGGTAGTGCAAACCTTGATGGGGTAGGGTTTGGTTTGGGTGCATTGGCTGACCAAATTTCACCTG
TATCACAAATTTCATTAATCGGAGAATTATCGATTAATGAATGGAACAATATACGTAAACCACAAATTTTTATCCATGAT
TTGATGGTTGAATCATGGCAGTTATTTGATTATCGAGGCCAGAAGCGAATCAATAGCATGGCACACACTGTTCCCGTTGA
AAACAGGAAATTCATCCTTTTCAATAAAGACCATTTTGATAACATAAATGCCGATTTGAAAGCAGAGTCAATTCTCATTC
AAAATCTTGACGATGCAAAGGCATTTGATGGGTATAGGGCGAATATCGCATTAGTCGATTTTCCACCATCAAAGGAGATC
TTAAAAGTTTTATTTGAGGGAAGACAGCCATCAAGGATTTATGCTTATTTTTACAAAGAATCCAGTGATTTTTTCAGCAC
GGTACCAACTCGTGAACATTTTAAATGGTACTATGGGTATCTAAAGAAAAATGGCCCAATTGATTTAAAACGACATGGAG
ATGTCATTGCCAAGCACCGCGGCTGGTCACAAGAAACCCTTTATTTTATGTCAAAGGTGTTTTCTGAATTGGATTTTGTT
ACAATAAATAATGGATTTATAACATTGAAAACAGGAGCGCAGAAGCGTGATTTAGCTGATTCGATTACCTATCAAACCAA
AAAGAGTCAATATGCACTTGAAAGGGATTTATTGTTCTCTTCCTTTCAAGAATTAAAAGGCTGGTTCGATCAAGTTATTC
AGGAGTCAGTTGAGACTGAGGAGGCAATTACAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(314-436)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.485

99.619

0.553