Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCG19_RS02950 Genome accession   NZ_CP133265
Coordinates   546534..548957 (-) Length   807 a.a.
NCBI ID   WP_166238713.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541534..553957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS02925 (RCG19_02925) alaS 541544..544180 (-) 2637 WP_308109602.1 alanine--tRNA ligase -
  RCG19_RS02930 (RCG19_02930) - 544508..545572 (-) 1065 WP_308109603.1 AI-2E family transporter -
  RCG19_RS02935 (RCG19_02935) - 545663..545797 (-) 135 WP_166238709.1 YrzQ family protein -
  RCG19_RS02940 (RCG19_02940) - 545820..546011 (-) 192 WP_149871089.1 hypothetical protein -
  RCG19_RS02945 (RCG19_02945) - 546023..546499 (-) 477 WP_166238711.1 PRC-barrel domain-containing protein -
  RCG19_RS02950 (RCG19_02950) recD2 546534..548957 (-) 2424 WP_166238713.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCG19_RS02955 (RCG19_02955) - 548990..549643 (-) 654 WP_308109604.1 tetratricopeptide repeat protein -
  RCG19_RS02960 (RCG19_02960) mnmA 549727..550845 (-) 1119 WP_308109605.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCG19_RS02965 (RCG19_02965) - 550886..552028 (-) 1143 WP_308109606.1 cysteine desulfurase family protein -
  RCG19_RS02970 (RCG19_02970) cymR 552074..552493 (-) 420 WP_166238721.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 91243.33 Da        Isoelectric Point: 4.9608

>NTDB_id=872953 RCG19_RS02950 WP_166238713.1 546534..548957(-) (recD2) [Neobacillus sp. OS1-2]
MEKQDALDLFAEQGKFVKGRPIVTIFHNEQNLYTVLRIRVDETNHPYEDKEAVVTGYFPKIHEQESYIFFGDFKEHPKFG
VQFHTNHFRKDMPQTKQGVVAYLSGEMFKGIGKKTAENIVETLGEDAISKILNQPSLLDSIPKLPPEKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQISMRIYQAYKEETLNTIQKNPYQLVEDIEGIGFGRADELGHQLGITGSHPDRIKAACLYTLEN
ESMQTGHVYMHAQDLLEQVRVLLEDNKRDQIEYIDISNEVIKLEEEGKIKVEEKRVYLPSLFFAEKGLVTSIQRILQQTE
YKEQFPESEFLLALGGLEERLQVQYAPSQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEIKDYHKKD
EPFPFLLAAPTGRAAKRMTESTGLPAVTIHRLLGFNGSEGFDRDDASPLEGKILIVDETSMLDIWLANQLFKALPENIQV
IMVGDEDQLPSVGPGQVLKDLLQSERIPTVRLTDIYRQAEGSSIIELAHEIKKGYLPANITAKQADRSFIKCSTTQVAQV
VEKVALNAKNKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGEVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENMEKQDMIYISFEGNEVEYTKQDLNQITHAYCCSVHKSQGSEFPIVILPITRSYYRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADELLRQTTLCQKLQETITVNALETSAKMTDQAVSNELSYEEELMQVNPMVGMENLTP
YDFLTNG

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=872953 RCG19_RS02950 WP_166238713.1 546534..548957(-) (recD2) [Neobacillus sp. OS1-2]
ATGGAAAAACAAGATGCGCTCGATTTATTTGCGGAGCAAGGAAAGTTTGTTAAAGGACGGCCAATCGTAACGATTTTTCA
TAATGAACAAAATCTTTATACCGTTTTAAGAATCCGTGTTGATGAAACAAATCATCCGTATGAGGACAAGGAAGCCGTAG
TTACCGGTTATTTCCCAAAAATTCATGAACAAGAATCCTATATCTTTTTCGGAGATTTTAAGGAACATCCTAAGTTTGGC
GTGCAATTTCACACCAATCATTTCCGTAAAGATATGCCCCAAACAAAACAAGGGGTCGTAGCCTATTTATCCGGTGAAAT
GTTTAAGGGAATTGGGAAAAAGACGGCCGAGAACATTGTTGAAACCTTGGGAGAAGATGCGATTTCGAAAATCCTCAATC
AGCCGTCGTTACTTGACTCTATTCCAAAGCTCCCTCCTGAAAAGGCGAAAATGCTTTATGATACGTTGATGGAGCATCAA
GGACTTGAGCAGGTTATGGTCGCCCTGAATCAATATGGCTTTGGCCCGCAGATTTCAATGCGGATTTATCAAGCGTATAA
AGAAGAAACACTTAATACGATTCAAAAAAATCCTTATCAGCTTGTCGAAGATATTGAAGGTATCGGTTTTGGCCGTGCGG
ATGAGCTTGGCCATCAGCTAGGGATTACAGGAAGCCATCCAGACCGAATAAAAGCTGCTTGCCTTTACACACTAGAAAAC
GAAAGTATGCAAACGGGACATGTTTACATGCATGCTCAAGATTTGTTAGAACAAGTAAGGGTACTGCTCGAAGACAATAA
ACGTGATCAAATTGAATACATAGACATTTCAAATGAGGTAATTAAGCTAGAAGAAGAGGGAAAAATAAAAGTTGAGGAAA
AGCGTGTATACCTGCCATCTTTATTTTTCGCTGAAAAGGGTCTTGTTACAAGTATTCAGCGGATATTACAGCAAACAGAA
TACAAGGAACAATTCCCTGAATCGGAGTTTCTACTGGCTTTAGGTGGATTAGAGGAACGTCTCCAAGTCCAATATGCCCC
GTCCCAAAGGGAAGCGATTCAAACGGCGTTAATGTCGCCAATGCTGATTTTAACAGGCGGACCTGGTACGGGTAAGACGA
CTGTAATCAAGGGAATAGTAGAACTATATGCAGAACTGCACGGCTGTTCCTTAGAAATAAAGGATTACCACAAAAAGGAC
GAGCCGTTTCCCTTTTTACTCGCTGCCCCGACCGGACGTGCTGCCAAACGAATGACAGAGTCGACGGGACTGCCTGCCGT
AACGATTCACCGATTACTTGGCTTTAATGGATCAGAAGGATTTGATCGTGATGATGCAAGCCCGCTCGAAGGGAAAATAT
TAATTGTTGACGAAACCTCAATGCTCGATATTTGGCTTGCCAATCAATTGTTCAAAGCATTACCAGAGAATATTCAAGTT
ATCATGGTCGGTGACGAGGATCAACTGCCTTCTGTCGGGCCAGGACAGGTTTTAAAAGACTTGCTGCAGTCTGAACGGAT
ACCGACTGTTCGCCTTACCGATATTTACCGGCAGGCAGAAGGATCATCGATCATCGAACTGGCACATGAAATTAAAAAAG
GATATTTGCCTGCAAATATAACTGCAAAACAGGCTGATCGCTCGTTTATTAAATGTTCAACGACGCAGGTGGCACAAGTG
GTGGAAAAAGTAGCCTTAAATGCCAAAAACAAAGGGTATTCAGCAAAAGATATACAGGTGTTGGCCCCAATGTACAGAGG
ACCAGCAGGAATTGATCGCTTAAATGTGCTGCTGCAGGAAATTTTCAACCCGAATCCAGATGGAAAACGGAAGGAAATCG
CCTTTGGTGAGGTAAAATACCGTATCGGTGATAAGGTACTCCAGCTTGTGAACCAGCCGGAAAGTAATGTGTTTAACGGG
GATATCGGTGAAATTATTTCAATCATTTATGCAAAAGAAAACATGGAGAAACAGGATATGATTTATATTTCCTTTGAAGG
GAATGAGGTCGAATATACAAAGCAGGACCTGAATCAAATCACCCATGCCTATTGCTGCTCGGTCCATAAATCACAGGGCA
GTGAATTTCCGATTGTTATTTTACCTATTACTAGAAGTTATTATCGGATGCTGCGAAGGAATTTAATTTATACGGCGATT
ACCAGAAGTAAACAATCATTGATTCTATGTGGTGAAGAGGATGCCCTTCGAATGGGGGTTGAACGAGCAGATGAGCTATT
GAGGCAAACGACTCTTTGTCAAAAGCTGCAAGAAACCATCACTGTGAATGCTCTTGAGACATCTGCCAAAATGACGGATC
AAGCCGTATCCAATGAATTATCCTATGAGGAAGAATTAATGCAAGTGAATCCAATGGTAGGTATGGAAAACCTTACACCT
TATGATTTTCTAACAAATGGCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.258

98.513

0.603