Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCG24_RS01440 Genome accession   NZ_CP133263
Coordinates   280854..283268 (+) Length   804 a.a.
NCBI ID   WP_308078136.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275854..288268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS01420 (RCG24_01420) cymR 277253..277672 (+) 420 WP_202652380.1 cysteine metabolism transcriptional regulator CymR -
  RCG24_RS01425 (RCG24_01425) - 277710..278852 (+) 1143 WP_202652382.1 cysteine desulfurase family protein -
  RCG24_RS01430 (RCG24_01430) mnmA 278891..280009 (+) 1119 WP_308078135.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCG24_RS01435 (RCG24_01435) - 280166..280816 (+) 651 WP_202652386.1 tetratricopeptide repeat protein -
  RCG24_RS01440 (RCG24_01440) recD2 280854..283268 (+) 2415 WP_308078136.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCG24_RS01445 (RCG24_01445) - 283300..283770 (+) 471 WP_308078137.1 PRC-barrel domain-containing protein -
  RCG24_RS01450 (RCG24_01450) - 283782..283973 (+) 192 WP_308078138.1 hypothetical protein -
  RCG24_RS01455 (RCG24_01455) - 284011..284145 (+) 135 WP_308078139.1 YrzQ family protein -
  RCG24_RS01460 (RCG24_01460) - 284329..285423 (+) 1095 WP_308078140.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90845.06 Da        Isoelectric Point: 4.8156

>NTDB_id=872885 RCG24_RS01440 WP_308078136.1 280854..283268(+) (recD2) [Neobacillus sp. OS1-32]
MAQQESLDLFGDEGRYIKGRPIVTIFHNEQNLYTVLRVRVDETNHSYDEKEAVITGYFPKVYDQETYIFYGEFKEHPKFG
LQFQAKHYRKDMPQSKQGIIAYLSGEMFKGIGKKTAENIVNTLGEDAISKILNQPSLLDSVPKLPPDKAKSLYDTLMEHQ
GLEQIMIALNQYGFGPQLSMRIYQVYKEETLNIIQKNPYKLVEDVEGIGFGRADELGFQLGISGNHPDRIKAGCLYVLEN
ECMQAGHVYMLAEDLLEQVKALLEENKRDQIEFLDISNEIIKLEEEGKIIGEEKRIYLPSLFFAEKGLVTSIQRILKQTE
YKDQFPESEFLLALGSLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPQDYDKKD
EAFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEGFDRDETSTLEGKILIVDETSMLDIWLANQLFKALPEEIQV
ILVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEIKQGRLPADITMKQADRSFIKCSTAQVAQV
VEKVALNAKSKGYTAKDIQVLAPMYRGPAGIDRLNLLLQDIFNPNPDGKRKEISFGEVKYRIGDKVLQLVNKPENNIFNG
DIGEIISIIYAKENTEKQDLVYISFEGTEVEYTRQDLNQITHAYCCSVHKSQGSEFPIVILPITRSYYRMLQRNLIYTAI
TRSKQSLILCGEPDALKMGVERADESKRLTTLCEKLQEAVPSAREKMERTTNMKPEMSLEEELMLVDPMIGMENLTPYDF
ITND

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=872885 RCG24_RS01440 WP_308078136.1 280854..283268(+) (recD2) [Neobacillus sp. OS1-32]
ATGGCACAGCAGGAATCTCTCGATTTATTTGGGGACGAGGGTCGATATATTAAAGGAAGACCGATTGTGACCATTTTTCA
CAATGAACAAAATCTTTACACCGTTCTTCGGGTTCGTGTCGATGAAACCAATCATTCATACGATGAGAAAGAAGCAGTAA
TCACCGGCTATTTTCCCAAAGTGTATGACCAGGAAACGTATATTTTTTACGGGGAATTTAAGGAACACCCTAAGTTTGGG
TTGCAATTTCAAGCCAAGCACTACCGCAAAGATATGCCGCAGTCAAAACAAGGGATTATCGCCTATTTATCCGGAGAAAT
GTTTAAAGGAATAGGGAAGAAAACGGCAGAAAATATTGTTAATACATTAGGCGAAGATGCGATTTCCAAAATCCTCAATC
AGCCCTCATTGCTGGATTCAGTGCCGAAACTCCCTCCAGATAAAGCAAAATCATTATATGATACGCTAATGGAACATCAA
GGGCTCGAACAGATTATGATTGCTCTTAATCAGTACGGCTTTGGACCACAGCTATCAATGCGAATTTATCAAGTTTATAA
AGAGGAAACTTTGAATATAATTCAAAAAAATCCCTATAAGCTTGTCGAGGATGTCGAAGGAATCGGGTTTGGCCGGGCAG
ATGAATTGGGATTCCAGCTTGGAATCTCCGGAAATCACCCGGACCGGATTAAGGCTGGTTGCTTGTATGTGTTAGAAAAT
GAGTGCATGCAAGCAGGACATGTTTACATGCTTGCTGAAGACCTGCTTGAACAAGTAAAAGCACTTCTTGAAGAAAATAA
GCGTGATCAAATTGAATTCCTGGATATCTCCAATGAGATAATCAAGCTTGAAGAAGAAGGAAAAATCATTGGTGAGGAAA
AGCGGATTTATTTGCCCTCGTTATTTTTTGCTGAAAAAGGACTAGTAACCAGTATTCAGCGGATCCTAAAACAAACTGAA
TACAAAGATCAATTCCCGGAATCGGAATTCCTGCTTGCATTAGGAAGTTTAGAAGAACGGCTTGGGGTTCAATATGCCCC
GACGCAAAAGGAAGCAATTCAAACGGCGCTCATGTCACCGATGCTGATTTTAACCGGCGGACCGGGAACGGGAAAAACAA
CGGTCATCAAGGGGATTGTCGAGCTTTACGGGGAATTGCATGGCTGCTCATTGGACCCGCAGGATTATGATAAGAAAGAC
GAAGCTTTTCCATTTTTACTGGCGGCCCCAACTGGAAGAGCAGCCAAAAGGATGAGCGAGTCAACAGGACTACCGGCAGT
AACGATCCACCGGCTCCTCGGTTTTAACGGCACAGAAGGCTTTGACCGCGATGAAACGAGCACATTGGAAGGAAAAATTT
TAATTGTTGATGAAACCTCAATGCTTGATATATGGCTGGCCAATCAACTGTTTAAGGCTTTGCCGGAAGAGATCCAAGTC
ATCCTCGTCGGCGATGAAGATCAGCTTCCATCGGTGGGACCGGGTCAGGTGTTAAAGGATTTGCTCCGATCCGAGCGAAT
TCCAACCGTCAGACTGACAGATATTTATCGCCAGGCAGAGGGATCGTCAATCATCGAGCTTGCCCATGAAATCAAACAGG
GACGGCTGCCCGCTGATATTACCATGAAACAGGCGGACCGCTCGTTTATTAAGTGCTCCACAGCACAGGTCGCCCAGGTG
GTCGAAAAGGTTGCTCTGAATGCAAAATCTAAAGGATATACGGCGAAAGATATTCAGGTGCTGGCACCGATGTATCGCGG
ACCGGCGGGGATCGATCGGTTAAATCTGTTATTACAGGATATCTTTAATCCGAATCCTGACGGCAAGCGCAAGGAAATTT
CTTTTGGTGAAGTGAAGTACCGGATTGGCGATAAGGTGCTTCAGCTTGTGAATAAACCGGAGAACAACATTTTTAACGGT
GACATTGGTGAAATTATTTCCATCATTTATGCCAAGGAAAATACGGAAAAACAAGATTTGGTCTATATTTCCTTTGAAGG
AACGGAAGTTGAATACACCAGGCAGGATTTAAACCAAATTACCCATGCCTATTGCTGCTCCGTCCATAAATCACAGGGCA
GCGAATTTCCGATTGTGATTCTTCCGATTACAAGAAGCTATTACCGAATGTTACAAAGGAATTTGATTTATACCGCTATT
ACCAGAAGCAAGCAGTCATTGATTCTGTGCGGCGAGCCTGATGCGCTCAAAATGGGTGTTGAAAGAGCGGATGAATCAAA
ACGATTAACCACATTATGTGAAAAGCTTCAGGAGGCCGTGCCTTCAGCTAGAGAGAAAATGGAACGAACCACAAACATGA
AACCTGAAATGTCATTAGAGGAAGAATTAATGCTGGTCGATCCAATGATCGGAATGGAAAACCTTACACCTTATGATTTT
ATAACAAATGACTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.017

99.876

0.619