Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCG22_RS22075 Genome accession   NZ_CP133262
Coordinates   4545077..4547524 (+) Length   815 a.a.
NCBI ID   WP_308104728.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4540077..4552524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS22050 (RCG22_22050) - 4540087..4541358 (-) 1272 WP_308104724.1 replication-associated recombination protein A -
  RCG22_RS22055 (RCG22_22055) cymR 4541522..4541941 (+) 420 WP_098259630.1 cysteine metabolism transcriptional regulator CymR -
  RCG22_RS22060 (RCG22_22060) - 4541987..4543129 (+) 1143 WP_308104725.1 cysteine desulfurase family protein -
  RCG22_RS22065 (RCG22_22065) mnmA 4543170..4544288 (+) 1119 WP_308104726.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCG22_RS22070 (RCG22_22070) - 4544390..4545043 (+) 654 WP_308104727.1 tetratricopeptide repeat protein -
  RCG22_RS22075 (RCG22_22075) recD2 4545077..4547524 (+) 2448 WP_308104728.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCG22_RS22080 (RCG22_22080) - 4547558..4548034 (+) 477 WP_066257797.1 PRC-barrel domain-containing protein -
  RCG22_RS22085 (RCG22_22085) - 4548046..4548237 (+) 192 WP_098259624.1 hypothetical protein -
  RCG22_RS22090 (RCG22_22090) - 4548323..4548457 (+) 135 WP_082797309.1 YrzQ family protein -
  RCG22_RS22095 (RCG22_22095) - 4548561..4549652 (+) 1092 WP_308104729.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 815 a.a.        Molecular weight: 92097.98 Da        Isoelectric Point: 4.8187

>NTDB_id=872871 RCG22_RS22075 WP_308104728.1 4545077..4547524(+) (recD2) [Neobacillus sp. OS1-33]
MEKQDTLDLFEEQGKFVKGRPIVTIFHNEQNLYTVLRIRVDETNHSYEDKEAVVTGYFPKIHEQETYIFFGEFKDHPKFG
LQFHTNHFRKDMPQTKQGVINYLSGEMFKGIGKKTAENIVETLGEDAISKILSQPSLLDTIPKLPPEKAKSLYDTLMEHQ
GLEQVMVALNQYGFGPQISMRIYQAYKDETLGILQKNPYQLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYILEN
ESIQNGHVYIHAEDLLEQVKALLEDNKRDQIDYQDISIEVIKLQEEGKLMGEEKRVYMPSLFFAEKGLVTNIHRILEQTE
YKDQFPESEFLLSLGSLEERLGVQYAPSQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYHKKG
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGLNGQEGFDHDDRSPLEGKIIIVDETSMLDIWLANQLFKALPENIQV
ILVGDEDQLPSVGPGQVLKDMLESERIPTVRLTDIYRQAEGSSIIELAHEIKKGYLPTDITMKQADRSFIKCSTAQVSQV
VEKVALNAKNKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGEVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMIYISFEGNEVEYTKQDLNQITHAYCCSVHKSQGSEFPIVVLPITRSYYRMLRRNLIYTAI
TRSKQSLILCGEVDALKMGVERADELSRQTTLCLKLHDSIAAPPNAEVSHQESDVVNPTESKNPTEELSYEELFIQEDPM
IGMENVSPYDFMVID

Nucleotide


Download         Length: 2448 bp        

>NTDB_id=872871 RCG22_RS22075 WP_308104728.1 4545077..4547524(+) (recD2) [Neobacillus sp. OS1-33]
ATGGAAAAGCAAGATACATTGGATTTATTTGAAGAACAAGGAAAATTCGTAAAGGGTAGGCCAATTGTAACTATTTTTCA
CAATGAACAAAACCTTTACACGGTTTTACGAATAAGAGTCGATGAAACCAATCATTCCTATGAGGATAAAGAAGCAGTGG
TCACTGGTTATTTTCCGAAAATACATGAACAAGAGACCTATATTTTTTTCGGGGAATTTAAGGATCATCCAAAGTTCGGT
CTTCAATTTCACACCAATCATTTCCGGAAGGACATGCCCCAAACAAAACAAGGGGTTATCAACTATTTGTCTGGGGAAAT
GTTTAAAGGGATTGGGAAAAAGACGGCTGAAAACATTGTCGAAACCTTAGGTGAAGATGCCATTTCTAAAATTCTCAGTC
AGCCGTCATTGCTTGACACCATTCCAAAGCTCCCTCCTGAAAAAGCAAAATCACTTTATGATACCTTGATGGAGCATCAA
GGACTTGAGCAAGTGATGGTTGCCTTAAACCAATATGGATTTGGACCGCAGATTTCGATGCGGATTTATCAGGCCTATAA
AGACGAAACGCTCGGAATATTACAGAAAAATCCCTATCAATTGGTAGAGGATATCGAAGGAATTGGTTTTGGCCGGGCCG
ATGAACTTGGCTACCAGCTCGGTATTTCAGGAAACCATCCTGACCGGATCAAAGCAGCCTGTCTTTACATACTTGAGAAC
GAAAGCATCCAAAATGGCCATGTTTACATCCATGCAGAGGACTTATTGGAGCAAGTAAAAGCACTCCTAGAAGATAACAA
GCGTGATCAAATTGACTATCAAGACATATCCATTGAGGTTATTAAGCTCCAAGAAGAGGGCAAATTAATGGGTGAAGAAA
AACGCGTGTACATGCCTTCATTATTTTTTGCTGAAAAGGGGCTTGTGACGAATATCCATCGCATTCTTGAGCAAACCGAA
TATAAAGACCAATTTCCAGAATCTGAATTTCTGTTATCGTTAGGCAGTTTAGAGGAACGGCTTGGGGTCCAATATGCACC
CTCGCAGCGAGAAGCCATCCAAACCGCGTTAATGTCACCCATGTTAATCTTAACCGGTGGACCTGGGACAGGGAAAACGA
CGGTTATCAAAGGGATTGTTGAGCTTTATGCTGAATTGCACGGCTGTTCCTTAGAGCCAAAGGATTACCATAAAAAAGGG
GAACCATTCCCATTCTTGCTTGCTGCACCAACTGGTAGAGCGGCTAAAAGAATGAGTGAATCGACGGGACTTCCGGCAGT
AACCATTCATCGTCTGCTTGGATTAAATGGGCAGGAAGGATTTGACCATGATGATCGCAGCCCGCTTGAGGGGAAAATTA
TTATTGTCGATGAAACCTCGATGCTTGATATTTGGCTTGCCAACCAACTATTTAAGGCTCTCCCTGAAAATATTCAAGTG
ATTCTGGTGGGGGATGAGGATCAATTGCCGTCAGTAGGGCCAGGACAGGTGTTAAAGGATATGCTGGAATCTGAACGGAT
TCCAACGGTTCGCTTAACCGATATTTATCGCCAGGCAGAAGGTTCTTCGATTATTGAGCTTGCCCATGAAATCAAAAAGG
GATATTTACCTACGGATATTACGATGAAGCAAGCCGACAGGTCGTTTATTAAATGTTCAACTGCGCAGGTATCCCAGGTA
GTTGAAAAAGTAGCCCTTAATGCAAAGAATAAAGGGTATTCCGCTAAGGATATTCAAGTATTGGCCCCAATGTATAGAGG
ACCTGCCGGAATCGACCGTTTAAATGTTTTGCTGCAAGAAATATTTAATCCAAACCCTGACGGTAAGCGAAAGGAAATTG
CGTTTGGTGAGGTGAAATATCGCATCGGTGATAAGGTGCTGCAGCTTGTCAACCAACCTGAAAGTAATGTCTTTAACGGA
GATATTGGAGAAATTATCTCCATTATTTATGCAAAGGAAAATACCGAAAAGCAGGATATGATATATATTTCCTTTGAAGG
CAATGAAGTGGAATACACTAAGCAGGACTTAAATCAAATTACGCATGCCTATTGTTGTTCCGTTCATAAATCTCAGGGCA
GTGAATTTCCGATTGTTGTCCTTCCGATTACAAGAAGTTATTATCGAATGCTGCGCAGAAATTTAATTTATACGGCAATT
ACTAGAAGTAAACAATCGTTAATTCTGTGTGGTGAAGTCGATGCACTTAAAATGGGCGTAGAAAGAGCGGATGAACTCTC
TAGGCAAACGACCCTCTGTCTCAAGCTCCATGATTCGATTGCAGCACCACCAAATGCTGAAGTAAGCCATCAGGAATCAG
ACGTTGTTAATCCAACGGAAAGTAAAAATCCGACCGAGGAATTATCCTACGAGGAACTATTCATACAAGAAGATCCAATG
ATTGGCATGGAAAACGTTTCACCTTATGATTTCATGGTAATTGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

AAA domain (AAA_30)

(345-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.864

99.387

0.605