Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RCG22_RS21990 Genome accession   NZ_CP133262
Coordinates   4525916..4528279 (+) Length   787 a.a.
NCBI ID   WP_308104714.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4520916..4533279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS21975 (RCG22_21975) spoVB 4521364..4522911 (-) 1548 WP_308104711.1 stage V sporulation protein B -
  RCG22_RS21980 (RCG22_21980) - 4523049..4523345 (+) 297 WP_308104712.1 post-transcriptional regulator -
  RCG22_RS21985 (RCG22_21985) secDF 4523491..4525755 (+) 2265 WP_308104713.1 protein translocase subunit SecDF -
  RCG22_RS21990 (RCG22_21990) recJ 4525916..4528279 (+) 2364 WP_308104714.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RCG22_RS21995 (RCG22_21995) - 4528270..4528782 (+) 513 WP_308104715.1 adenine phosphoribosyltransferase -
  RCG22_RS22000 (RCG22_22000) - 4528959..4531157 (+) 2199 WP_308104716.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RCG22_RS22005 (RCG22_22005) dtd 4531171..4531614 (+) 444 WP_308104717.1 D-aminoacyl-tRNA deacylase -
  RCG22_RS22010 (RCG22_22010) - 4531662..4532984 (-) 1323 WP_308104718.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87916.96 Da        Isoelectric Point: 5.0427

>NTDB_id=872870 RCG22_RS21990 WP_308104714.1 4525916..4528279(+) (recJ) [Neobacillus sp. OS1-33]
MLSSKTRWIVRKSDEQLIKMLETELKITPLVASLLVNRGISTVESARYFLFGKEEFHDPFLLKGMDIAVTRIREAIENQE
PILIFGDYDADGVSSTSVLMMTLRDLGANVQFYIPNRFTEGYGPNEAAFRKAADNGINLIITVDTGISAVHEATIAKELG
IDLIITDHHEPGPILPEALAIIHPKLPDSIYPFRELAGVGVAFKLAQALYGEVPEHLLEIAVIGTIADLVSLTDENRLIA
KKGLERLKTTKNIGLKAILKLAGVDPLSINEETIGFTLAPRINAVGRLEDADLAVQLILTDDPLEAESLAAEMDALNKSR
QSIVNTITAEAMEEVEKNFPIDSNKVLVIGKEGWNAGVIGIVASRLVEKYYRPTIVLNFDPEKGVAKGSARSIAGFDLFK
NLSTCRDILPHFGGHPMAAGMTLNLENVTELRSRLNALAEQQLTAKDLIPVTYLDEEIQLQNVNLSSLDEMSLLAPFGVD
NPKPKVLINHVDITSIRKIGSEQNHLKVLVNEKGANLDGVGFGLGHLVDHISPASKISLIGELSVNEWNNIRKPQIFIHD
IAVESWQLFDYRGQKRINNLSNAVPVENRKFIIFNQEYLEKINPNLMADTILIKDIEAAKAFKGNKANIVLVDFPSSKEI
LEVLLSGTQPARIYAYFYKESSDFFSTIPTRDHFKWFYAFLLKKGPMDLKRHGDELAKQRGWSQETINFMSKVFSDLDFV
TINNGFITLKTGAQKRDLTDSRTYQIKQAQYELERELLFSSFQELKSWFDLVIQESVETEEAISEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=872870 RCG22_RS21990 WP_308104714.1 4525916..4528279(+) (recJ) [Neobacillus sp. OS1-33]
ATGTTAAGTTCGAAAACAAGATGGATTGTTCGTAAATCCGATGAGCAACTTATCAAAATGCTTGAAACTGAATTAAAAAT
TACACCTCTTGTAGCTTCACTGCTAGTTAACCGTGGCATTAGTACCGTTGAGTCTGCACGGTATTTTTTATTTGGAAAAG
AAGAATTCCACGATCCCTTTCTTTTAAAAGGAATGGATATTGCAGTTACGAGAATTCGTGAAGCCATCGAAAACCAAGAG
CCGATTCTCATTTTCGGCGATTACGATGCTGATGGAGTGAGCAGCACTTCCGTATTAATGATGACGCTTCGTGATCTTGG
TGCCAATGTTCAATTTTACATCCCTAATCGTTTTACCGAAGGATATGGTCCGAATGAAGCTGCATTTCGGAAAGCAGCGG
ATAATGGAATAAATTTAATTATTACTGTGGATACTGGAATATCAGCTGTCCATGAAGCAACCATTGCCAAAGAGCTTGGA
ATAGATCTAATCATTACTGATCACCATGAACCAGGTCCAATCTTGCCAGAAGCGCTTGCGATCATTCATCCCAAGCTTCC
TGACAGTATTTACCCGTTTCGTGAATTAGCAGGTGTGGGTGTAGCTTTTAAACTTGCCCAGGCCCTCTACGGAGAGGTTC
CAGAGCATTTGTTGGAAATTGCTGTGATTGGGACCATTGCTGATTTAGTCTCTCTAACAGATGAAAATCGCCTGATTGCC
AAAAAAGGACTTGAAAGGCTAAAAACAACAAAGAATATCGGGCTTAAAGCCATTTTAAAACTGGCAGGGGTTGACCCCCT
GTCGATAAATGAAGAAACGATAGGCTTTACCCTTGCGCCAAGGATTAATGCCGTCGGTCGGTTAGAAGACGCTGACTTAG
CCGTTCAGCTTATCTTAACGGATGATCCACTCGAAGCTGAAAGCCTTGCAGCGGAAATGGATGCCCTCAATAAGTCAAGA
CAGTCGATTGTTAATACGATTACGGCTGAGGCGATGGAAGAGGTTGAAAAGAATTTCCCAATCGATTCTAACAAAGTTTT
AGTCATCGGCAAGGAAGGCTGGAACGCCGGGGTTATTGGAATTGTTGCCTCAAGGCTGGTTGAAAAGTATTACCGGCCCA
CAATCGTCTTGAATTTTGACCCAGAAAAGGGAGTGGCAAAGGGTTCGGCCCGAAGTATTGCCGGATTTGATTTATTTAAG
AATTTATCAACCTGCCGTGATATTTTGCCACACTTTGGCGGTCACCCAATGGCAGCTGGGATGACCTTAAACTTAGAGAA
TGTTACGGAACTCCGCTCAAGGTTAAATGCACTGGCAGAACAACAACTTACTGCTAAGGATTTAATTCCCGTAACGTATC
TCGATGAGGAAATTCAACTGCAAAATGTAAATCTTTCATCATTAGATGAAATGAGTCTTCTTGCTCCTTTTGGTGTAGAT
AACCCTAAGCCAAAAGTTTTAATAAACCATGTGGATATTACGAGTATTAGAAAAATTGGCAGTGAGCAAAACCATTTAAA
GGTATTAGTGAATGAGAAGGGTGCAAACCTTGATGGGGTAGGCTTTGGTTTAGGACACTTAGTGGATCATATCTCACCAG
CATCAAAAATTTCGTTAATTGGAGAATTATCTGTTAACGAATGGAACAATATACGTAAACCGCAAATTTTTATCCACGAT
ATTGCAGTAGAGTCTTGGCAATTATTTGACTATCGCGGACAGAAGCGGATCAACAACCTTTCAAATGCTGTACCAGTTGA
AAACAGGAAATTTATCATTTTTAATCAAGAATATCTTGAAAAAATAAACCCGAATCTGATGGCTGATACTATTTTAATAA
AAGATATCGAAGCGGCAAAGGCTTTCAAAGGGAACAAGGCAAATATTGTTCTGGTTGACTTTCCATCATCTAAAGAAATC
CTCGAGGTTTTGTTAAGCGGGACACAGCCTGCAAGAATTTATGCATATTTTTATAAAGAATCCAGTGATTTCTTTAGTAC
CATTCCGACCCGTGACCATTTCAAATGGTTTTATGCTTTTCTGTTAAAAAAAGGGCCGATGGATCTAAAACGTCATGGAG
ACGAACTGGCGAAGCAGCGCGGTTGGTCGCAAGAAACGATAAATTTTATGTCTAAGGTGTTTTCTGACCTGGATTTTGTT
ACAATAAACAATGGCTTTATAACTTTGAAAACCGGAGCGCAAAAGCGTGACTTAACGGACTCTCGAACCTATCAAATAAA
ACAAGCACAATACGAACTTGAAAGGGAATTATTGTTTTCATCCTTTCAGGAATTAAAGAGCTGGTTCGATCTAGTAATTC
AAGAGTCGGTTGAAACTGAGGAGGCAATTTCAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(314-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.357

99.619

0.551