Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCF70_RS05635 Genome accession   NZ_CP133247
Coordinates   1153619..1156000 (+) Length   793 a.a.
NCBI ID   WP_107359399.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148619..1161000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS05610 (RCF70_05575) - 1149229..1149384 (+) 156 WP_165806095.1 hypothetical protein -
  RCF70_RS05615 (RCF70_05580) - 1149429..1150442 (-) 1014 WP_107359403.1 LLM class flavin-dependent oxidoreductase -
  RCF70_RS05620 (RCF70_05585) - 1150662..1151810 (+) 1149 WP_107359402.1 cysteine desulfurase family protein -
  RCF70_RS05625 (RCF70_05590) mnmA 1151807..1152919 (+) 1113 WP_107364414.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCF70_RS05630 (RCF70_05595) - 1152942..1153616 (+) 675 WP_107359400.1 tetratricopeptide repeat protein -
  RCF70_RS05635 (RCF70_05600) recD2 1153619..1156000 (+) 2382 WP_107359399.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCF70_RS05640 (RCF70_05605) alaS 1156226..1158856 (+) 2631 WP_107359398.1 alanine--tRNA ligase -
  RCF70_RS05645 (RCF70_05610) - 1158918..1159190 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  RCF70_RS05650 (RCF70_05615) ruvX 1159183..1159611 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  RCF70_RS05655 (RCF70_05620) - 1159626..1159940 (+) 315 WP_105985439.1 DUF1292 domain-containing protein -
  RCF70_RS05660 (RCF70_05625) - 1160320..1160964 (+) 645 WP_107359397.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89635.75 Da        Isoelectric Point: 4.5700

>NTDB_id=872786 RCF70_RS05635 WP_107359399.1 1153619..1156000(+) (recD2) [Staphylococcus chromogenes strain TA]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGESYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSDLFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEEVLTQLVEENRLVDDQENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGDIEQENNVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGIF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPVVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMEDVTPYDFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=872786 RCF70_RS05635 WP_107359399.1 1153619..1156000(+) (recD2) [Staphylococcus chromogenes strain TA]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGGAATATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGGGAATCTTATACGTTCAAGGGGCAAATCACTGATCATCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACTTTCCAAAAGGTGCTTCCGCAAACGAGAGAAGCGGTGATTCAATATTTATCAAGTGATCTTTTCAAGGGAGTCGGTAA
GAAAACTGCAGAATCCATTGTAGATACTTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTACCCAAATTGTCAAAAACAAAGCAATCACAAATCGCAGATCAAGTATTTCAAAACCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTAGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGAAACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAACAGTCAGGTGCCTATCGAAAC
AACTTTAATTGAAGAAGTATTGACTCAGCTTGTAGAAGAAAACCGTCTCGTTGATGATCAAGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTACACCTCGAAGTTTTTGAT
CAATCGGATATTCAAATGCATATAGGTGATATCGAGCAAGAAAATAATGTATCCTATGCTGAGGCGCAAAAAGAGGCGTT
AGAAGCCGCTATGAAGCATCAAATAATGATTCTGACAGGGGGGCCTGGTACAGGTAAAACCACTGTAATTAAAGGAATCG
TTTATCTCTATGCTGCTTTACATGGAATTTCCTTAGATTACGATGACTATACGGAAGAGGATTATCCTATTGTTTTAGCA
GCTCCGACAGGCCGTGCTTCGAAACGATTACACGATGCGACTGGCCTAGAGGCTATGACCATTCACCGTCTTATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATTTTGGATAATGAAATCTCTGCCAAGCTTATTATCATAGATGAAATGTCGATGG
TGGATACTTGGTTGTTTCATCAATTTATGGCGGCTGTTCCTAATGATGCACAAGTTGTTTTGGTGGGTGATGAAGATCAA
CTCCCATCGGTTGGGCCTGGACAAGTGTTTAAAGATTTAATCGCCTCAAAAACACTCCCACGTATCAATTTGACAGAAGT
TTATCGCCAGCAAGATGGTTCAAGTATCATTGCGCTTGCACATCGCATGAAATCAGGTCAATCTGTTGATATCACTGAAC
GTTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTTCGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGGTATGATATGTCGGATATACAAGTATTAGCTCCAATGTACCGAGGAAATGCAGGGATTCATCGACTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGTGAAATTCAGTTTGGGGATGTGTTGTTTCGAAAAG
GCGATAAGGTATTACAACTTGTCAATCGTCCGAATGACAATGTATTTAATGGCGATATCGGAGTAATTGTAGGTATTTTT
TGGGCCAAAGAAAATGCGCTAAACAAGGATGTCGTTGTTGTGGATTATGAAGGCAATGAAATTACATATTTAAAATCAGA
TTTAACTGAGTTGACACATGCCTATTGTACATCAATTCATAAAGCTCAAGGTTCAGAATTCCCGATAGTCATTATGCCTG
TTGTCAAACAATACTATAGAATGTTGCAAAAGCCCATTTTATATACGGGGCTTACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAACGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGGATGTGACGCCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

AAA domain (AAA_30)

(339-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.239

99.369

0.489