Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCF71_RS05860 Genome accession   NZ_CP133244
Coordinates   1177298..1179679 (+) Length   793 a.a.
NCBI ID   WP_419790233.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172298..1184679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS05835 (RCF71_05815) - 1172909..1173064 (+) 156 WP_165806095.1 hypothetical protein -
  RCF71_RS05840 (RCF71_05820) - 1173108..1174121 (-) 1014 WP_037574175.1 LLM class flavin-dependent oxidoreductase -
  RCF71_RS05845 (RCF71_05825) - 1174341..1175489 (+) 1149 WP_037574172.1 cysteine desulfurase family protein -
  RCF71_RS05850 (RCF71_05830) mnmA 1175486..1176598 (+) 1113 WP_037574167.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCF71_RS05855 (RCF71_05835) - 1176621..1177295 (+) 675 WP_037574164.1 tetratricopeptide repeat protein -
  RCF71_RS05860 (RCF71_05840) recD2 1177298..1179679 (+) 2382 WP_419790233.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCF71_RS05865 (RCF71_05845) alaS 1179905..1182535 (+) 2631 WP_419790234.1 alanine--tRNA ligase -
  RCF71_RS05870 (RCF71_05850) - 1182597..1182869 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  RCF71_RS05875 (RCF71_05855) ruvX 1182862..1183290 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  RCF71_RS05880 (RCF71_05860) - 1183305..1183619 (+) 315 WP_037574148.1 DUF1292 domain-containing protein -
  RCF71_RS05885 (RCF71_05865) - 1184000..1184644 (+) 645 WP_037574145.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89583.76 Da        Isoelectric Point: 4.5641

>NTDB_id=872752 RCF71_RS05860 WP_419790233.1 1177298..1179679(+) (recD2) [Staphylococcus chromogenes strain IM]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSELFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTNQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISELHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEEVLTQLVEENRLVDDQENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQTNSVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGVF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=872752 RCF71_RS05860 WP_419790233.1 1177298..1179679(+) (recD2) [Staphylococcus chromogenes strain IM]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGAAACATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACTTTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGAACTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAATCAATCGCAAATCGCAGACCAAGTATTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACTTCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGAAACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATCGAAAC
AACTTTAATTGAAGAAGTATTGACTCAGCTTGTAGAAGAAAACCGTCTCGTTGATGATCAAGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTACACCTCGAAGTGTTTGAT
CAATCGGATATTCAGATGCATATTGGTGAAATCGAGCAAACAAATAGTGTGTCATATGCCGAGGCACAAAAAGAGGCGTT
AGAAGCCGCTATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACACGGGATTTCTTTAGATTACGATGACTATACGGAAGAGGATTATCCTATTGTTTTAGCA
GCTCCGACAGGCCGTGCTTCGAAACGATTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTTATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCTGCCAAACTTATTATTATAGATGAAATGTCAATGG
TAGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCTGTTGGGCCTGGGCAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAGGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTTATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTACGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGCTATGATATGTCTGATATACAAGTATTAGCTCCAATGTACCGAGGAAATGCAGGGATTCATCGATTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGCGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGATAAGGTATTACAACTTGTCAATCGCCCGAATGACAATGTATTTAATGGCGACATCGGAGTTATTGTAGGTGTTTTT
TGGGCTAAGGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGACTATGAAGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATAGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.985

99.369

0.487